PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g004370.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 290aa    MW: 33209.3 Da    PI: 7.0888
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g004370.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.71.8e-12631431497
                     T-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  14 grlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +++ lp  f+++  +  + ++++t+++ +sg+ W+++++ ++ s++ +l++GWk+ vk+ ++ e  f+vF++dg++ f  ++ v+
  Csa05g004370.2  63 DNMNLP--FVSDTTSGMHLPQKVTVKSvSSGNIWRMEMTTNGESDALFLQDGWKKIVKDENITEPVFLVFEFDGSRLF--HFCVY 143
                     333333..444443334578899***99999*******99*******************************9986666..66655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-1451145IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.1E-1251145IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.43352146IPR003340B3 DNA binding domain
SMARTSM010199.3E-952146IPR003340B3 DNA binding domain
CDDcd100171.59E-753143No hitNo description
PfamPF023622.8E-957142IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-5197287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-7197270IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.98197282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MLAFIRPKEC SLCCIIISLS LSLSPKRRSQ IQNELTEKMT TQGSNGDLIQ KFFRVYIPNF  60
TEDNMNLPFV SDTTSGMHLP QKVTVKSVSS GNIWRMEMTT NGESDALFLQ DGWKKIVKDE  120
NITEPVFLVF EFDGSRLFHF CVYEHSTMCK RTRSLIEKEV IEVESEEETE DVNVESEKNT  180
KGSPVDEYLD DELNSSFPVD MTQSRTRIPS LLIKDYKLTF PNLVTVRDKI GKLKRKILVW  240
KNGSVYLSGL SSFIRRNHVK QGDKMFCELK MVDGYIGLVH EIKVHIIKG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g004370.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508235.10.0PREDICTED: B3 domain-containing protein REM22-like
SwissprotQ9STF11e-117REM22_ARATH; B3 domain-containing protein REM22
TrEMBLR0FY441e-130R0FY44_9BRAS; Uncharacterized protein
STRINGXP_010508235.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46770.11e-109B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]