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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g003610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 355aa MW: 37525.3 Da PI: 10.1774 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.9 | 6.4e-37 | 66 | 153 | 2 | 88 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++ +++ + + ++ + Csa05g003610.1 66 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsVNGTLKIPTTTNADS 153 57999***********************************************************888884442111111111111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-30 | 71 | 150 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.327 | 72 | 126 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MATYHQKQEE VGVKDQTLSR AVGVRNVETS RPFQVNPTVS LEPKPEPVMQ MQAPLSLAPP 60 SSTGPPLKRA STKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE TIRWLLENAE 120 PAIIAATGTG TVPAIAMSVN GTLKIPTTTN ADSDLGDNPM KKKRKRPSNS EYIDINDAVS 180 ASSGLAPITT TTTTTTMIQQ PPAAPSTTVA QQHMYPMWAI PSNAVIPTVG AFFLVPQIAG 240 PSNQPQLLAF PAAAAAPPSS YVAAVQQVSS LARPPPSHQV YPGSGVSDAS GSNSSRTTSA 300 MAPSSSSGIK TGGSSSSVTT TPTHTLRDFS LEIYEKQELH QFMSTTTTTR SSNH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g003610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC003680 | 1e-179 | AC003680.3 Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete sequence. | |||
GenBank | AF370606 | 1e-179 | AF370606.1 Arabidopsis thaliana putative PCF2-like DNA binding protein (At2g45680; F17K2.21) mRNA, complete cds. | |||
GenBank | AK221599 | 1e-179 | AK221599.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-89-L23. | |||
GenBank | AK230451 | 1e-179 | AK230451.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-49-E05. | |||
GenBank | AY056214 | 1e-179 | AY056214.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds. | |||
GenBank | AY113981 | 1e-179 | AY113981.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds. | |||
GenBank | CP002685 | 1e-179 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010508127.1 | 0.0 | PREDICTED: transcription factor TCP9-like | ||||
Swissprot | O64647 | 1e-173 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | R0HGG1 | 0.0 | R0HGG1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010508128.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9831 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 1e-152 | TCP family protein |