PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g003560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 493aa    MW: 54166.1 Da    PI: 9.4537
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g003560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.6e-08168191226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C+++ + G Ck G+ CkF H+
  Csa05g003560.1 168 RESVCKYWKA-GNCKKGEECKFLHS 191
                     6789******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-7164191IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-7166192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.446166193IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7167191IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-5168191IPR000571Zinc finger, CCCH-type
SuperFamilySSF509787.32E-45197488IPR017986WD40-repeat-containing domain
SMARTSM003201.5E-4197236IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.105.7E-46199487IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5008212.48204245IPR001680WD40 repeat
PROSITE profilePS5029423.862204492IPR017986WD40-repeat-containing domain
PfamPF117152.1E-4219263No hitNo description
PROSITE patternPS006780223237IPR019775WD40 repeat, conserved site
PRINTSPR003206.2E-7223237IPR020472G-protein beta WD-40 repeat
SMARTSM0032060277314IPR001680WD40 repeat
SMARTSM003202.7E-5322359IPR001680WD40 repeat
PfamPF004002.5E-4324359IPR001680WD40 repeat
PROSITE profilePS5008212.179329368IPR001680WD40 repeat
PROSITE patternPS006780346360IPR019775WD40 repeat, conserved site
PRINTSPR003206.2E-7346360IPR020472G-protein beta WD-40 repeat
SMARTSM003203.5E-5362399IPR001680WD40 repeat
PfamPF004007.4E-4364398IPR001680WD40 repeat
PROSITE profilePS500829.406369408IPR001680WD40 repeat
PRINTSPR003206.2E-7386400IPR020472G-protein beta WD-40 repeat
SMARTSM0032084405446IPR001680WD40 repeat
SMARTSM0032029450486IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MNHKAPRRYS QGRNFGVDRQ QDFAVDIVPR SSSVPYDKRV RKGPYNGSRN LVWTSKEFQT  60
SQGNRPRKNG PYGSMNSLVS STGYRVSNQP RKNEAYKPMN SPVSGTGYRV SNQPKKNEAY  120
KPMNSPVSGS GCRVSNQPRK NGLYGSRSST ISGSRVWTSE DNGSPKFRES VCKYWKAGNC  180
KKGEECKFLH SWCCFPGLVM VATLEGHKKD IKGIALPQGS DKLYSVSGDG ALRIWDCHTG  240
QCVHEINLQA EAGSLISEGP WVFLGLPNAV KAFNVQTRKD LHLNGSVGDQ VNAMAVGNGM  300
LFAGTSSGSI SVWKVTDTES DPFKYLTSLE GHSGEVKCFV VGGQRLYSGS VDKTIKVWDL  360
DTLQCIMTLR QHSDTVTSLL CWDQYLLSSS LDGTIKVWGS SESPNLKVIH TRSQEQSVHA  420
LCGLHDAEAR PIIFCSYQNG TVGIYDLPSF EERGKMFSTH TMDTLTVGPE GMFFSGDKGG  480
KVRVWRLGGS KE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6o_A7e-172014928323Ika8
6g6o_B7e-172014928323Ika8
6g6o_C7e-172014928323Ika8
6g6p_A7e-172014928323Ika8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g003560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100641.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A087H5G00.0A0A087H5G0_ARAAL; Uncharacterized protein
STRINGA0A087H5G00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein