PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g002870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 347aa MW: 38982.5 Da PI: 4.7719 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.6 | 6.5e-18 | 56 | 106 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps+ r+r +lg+f taeeAa +++a+ +l+g+ Csa05g002870.1 56 KYRGVRQRP-WGKYAAEIRDPST---RTRLWLGTFATAEEAALGYDRAAIRLKGH 106 8********.**********976...5*************************997 PP | |||||||
2 | AP2 | 41.5 | 3.3e-13 | 163 | 206 | 9 | 56 |
AP2 9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ +g+++AeIrdps+ r+r +lg+f taeeAa +++a+ +l+g+ Csa05g002870.1 163 RP-WGKYAAEIRDPST---RTRLWLGTFATAEEAALGYDRAAIRLKGH 206 67.**********976...5*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-35 | 56 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-29 | 56 | 112 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.759 | 56 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-20 | 56 | 113 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-11 | 56 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.4E-10 | 57 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.36E-30 | 57 | 112 | No hit | No description |
PRINTS | PR00367 | 5.4E-10 | 79 | 95 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-26 | 156 | 219 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.531 | 156 | 213 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-24 | 157 | 212 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.71E-25 | 162 | 212 | No hit | No description |
SuperFamily | SSF54171 | 4.18E-16 | 162 | 213 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.1E-7 | 162 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MIDDEEEYDN KSLPPRVKRF VEEIRFCNND DGDKPERKVK SKSETAAKVV VKPVVKYRGV 60 RQRPWGKYAA EIRDPSTRTR LWLGTFATAE EAALGYDRAA IRLKGHNAQT NFLTPPPPPP 120 LPPVIDLETV SGCDSAKESQ ISSSLCSPTS VLRFGHYEET EQRPWGKYAA EIRDPSTRTR 180 LWLGTFATAE EAALGYDRAA IRLKGHNAQT NFLTPPPPPP LPPVIDLETV SGCDSAKESQ 240 ISSSLCSPTS VLRFGHYEET EFRTEPMTKQ EEALLSSDPF FLPDLFRSGD FFWDSKFTPD 300 PLFLLDETTH NNQNNNTVSE SFPLGVIGDF SSWDVDEFFQ DHLFDK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 57 | 212 | 5 | 62 | ATERF1 |
3gcc_A | 2e-20 | 57 | 212 | 5 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g002870.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010508039.1 | 1e-114 | PREDICTED: ethylene-responsive transcription factor CRF5-like | ||||
Swissprot | O82339 | 3e-94 | CRF5_ARATH; Ethylene-responsive transcription factor CRF5 | ||||
TrEMBL | R0FY07 | 1e-96 | R0FY07_9BRAS; Uncharacterized protein | ||||
STRING | XP_010508039.1 | 1e-114 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2578 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46310.1 | 6e-91 | cytokinin response factor 5 |
Publications ? help Back to Top | |||
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