PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g002870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 347aa    MW: 38982.5 Da    PI: 4.7719
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g002870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-1856106256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y+GVr+++ +g+++AeIrdps+   r+r +lg+f taeeAa  +++a+ +l+g+
  Csa05g002870.1  56 KYRGVRQRP-WGKYAAEIRDPST---RTRLWLGTFATAEEAALGYDRAAIRLKGH 106
                     8********.**********976...5*************************997 PP
2AP241.53.3e-13163206956
             AP2   9 dkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     ++ +g+++AeIrdps+   r+r +lg+f taeeAa  +++a+ +l+g+
  Csa05g002870.1 163 RP-WGKYAAEIRDPST---RTRLWLGTFATAEEAALGYDRAAIRLKGH 206
                     67.**********976...5*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.4E-3556119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2956112IPR001471AP2/ERF domain
PROSITE profilePS5103221.75956113IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2056113IPR016177DNA-binding domain
PfamPF008471.1E-1156106IPR001471AP2/ERF domain
PRINTSPR003675.4E-105768IPR001471AP2/ERF domain
CDDcd000188.36E-3057112No hitNo description
PRINTSPR003675.4E-107995IPR001471AP2/ERF domain
SMARTSM003803.3E-26156219IPR001471AP2/ERF domain
PROSITE profilePS5103218.531156213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-24157212IPR001471AP2/ERF domain
CDDcd000183.71E-25162212No hitNo description
SuperFamilySSF541714.18E-16162213IPR016177DNA-binding domain
PfamPF008477.1E-7162206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MIDDEEEYDN KSLPPRVKRF VEEIRFCNND DGDKPERKVK SKSETAAKVV VKPVVKYRGV  60
RQRPWGKYAA EIRDPSTRTR LWLGTFATAE EAALGYDRAA IRLKGHNAQT NFLTPPPPPP  120
LPPVIDLETV SGCDSAKESQ ISSSLCSPTS VLRFGHYEET EQRPWGKYAA EIRDPSTRTR  180
LWLGTFATAE EAALGYDRAA IRLKGHNAQT NFLTPPPPPP LPPVIDLETV SGCDSAKESQ  240
ISSSLCSPTS VLRFGHYEET EFRTEPMTKQ EEALLSSDPF FLPDLFRSGD FFWDSKFTPD  300
PLFLLDETTH NNQNNNTVSE SFPLGVIGDF SSWDVDEFFQ DHLFDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2057212562ATERF1
3gcc_A2e-2057212562ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g002870.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508039.11e-114PREDICTED: ethylene-responsive transcription factor CRF5-like
SwissprotO823393e-94CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLR0FY071e-96R0FY07_9BRAS; Uncharacterized protein
STRINGXP_010508039.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.16e-91cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]