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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g002280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 322aa MW: 36142 Da PI: 6.7588 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.5 | 9.9e-32 | 40 | 145 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + Csa05g002280.1 40 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCvGDsgR 134 89****************************66677899*************************************************44333246 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 + +l++ ++r+ Csa05g002280.1 135 DSRLFIDWRRR 145 77788888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.2E-41 | 31 | 147 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.41E-30 | 37 | 132 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.70E-24 | 38 | 140 | No hit | No description |
Pfam | PF02362 | 6.3E-29 | 40 | 145 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.748 | 40 | 146 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 9.5E-23 | 40 | 146 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MMTNLSLSRD GDEEEEDEEE KKLLQEGEGA REVVEREHMF DKVVTPSDVG KLNRLVIPKQ 60 HAERFFPLDS SSNEKGLLLN FEDLTGKSWR FRYSYWNSSQ SYVMTKGWSR FVKDKKLDAG 120 DIVSFQRCVG DSGRDSRLFI DWRRRPKVPD HHPHFSAGAM FPRFYSFPST SYNLYNHQQQ 180 RHHHHHGGGY NYHQIPREFG YGYFVRSVDQ RVSSSAAVVA DPLVIESVPV MMHGRANQGL 240 VGTAGKRLRL FGVDMECGES GMTTNSTEEE ESSSGGSLPR GGGGGGASSS PSLFQLRLGS 300 NSEDDHFSKK GKSSLSFDLD Q* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-79 | 33 | 148 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-79 | 33 | 148 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g002280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN428855 | 0.0 | FN428855.1 Arabidopsis halleri subsp. halleri partial BAC clone 7G24 containing mtp1-A1 and mtp-A2 genes. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010507960.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1 | ||||
Swissprot | O82799 | 0.0 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A178VXJ8 | 0.0 | A0A178VXJ8_ARATH; NGA1 | ||||
TrEMBL | C3VMM2 | 0.0 | C3VMM2_ARATH; NGATHA1 | ||||
STRING | XP_010507960.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-146 | B3 family protein |