PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g001330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 476aa    MW: 50732.3 Da    PI: 8.6682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g001330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-105275427
                    ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                    + C +++rtG C yG+rC+++H++
  Csa05g001330.1 52 PDCAYYMRTGVCGYGNRCRYNHPR 75
                    78********************96 PP
2zf-CCCH391.4e-1298120527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     +C+f+++tGtCk+G++CkF+H++
  Csa05g001330.1  98 PCQFYLKTGTCKFGASCKFHHPK 120
                     8********************96 PP
3zf-CCCH36.21e-11142166327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     + +C+++++tG+Ck+G +CkF+H++
  Csa05g001330.1 142 ENECSYYLKTGQCKFGITCKFHHPQ 166
                     678********************97 PP
4zf-CCCH37.83.3e-12297323127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+G +CkF+H++
  Csa05g001330.1 297 PGEPECQYYLKTGDCKFGTSCKFHHPR 323
                     5799*********************96 PP
5zf-CCCH32.61.3e-10344368226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +  +C f+ ++G+Ck+G++CkF H+
  Csa05g001330.1 344 GVQRCTFYVQNGFCKFGSTCKFDHP 368
                     6779********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2534876IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-54875IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-85275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-65277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-593120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-598119IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-1098120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.98198121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.995139167IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5139166IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-9142166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5143167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5296323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356296324IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-9298323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-5302324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183342370IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5342369IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-8344368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6344373IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-5348368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MDMYARNPIN GSQSAQAPPD WTPADADSGL EESMWRLGLG SSETYPERLG APDCAYYMRT  60
GVCGYGNRCR YNHPRDRASV EATVRATGQY PERIGELPCQ FYLKTGTCKF GASCKFHHPK  120
NAGGSMSHVP LNIYGYPVRE GENECSYYLK TGQCKFGITC KFHHPQPAGT SVPPPPPPPA  180
SAPQFYPSVQ SLMPDQYGGP SSSLRVARTL LPGSYMQGAY GPMLLTPGVV PIPGWSPYSA  240
PVSPALSPGA QHAVGATSLY GVTQLSSTSP SLPGVYPSLS SPTGVIQKEQ AAFPERPGEP  300
ECQYYLKTGD CKFGTSCKFH HPRDRVPPRA NCILSPIGLP LRPGVQRCTF YVQNGFCKFG  360
STCKFDHPVG TIRYNPSASS LADAPVAPYP VSSLLGALAA APSSSSTELM TGGAKDPYLT  420
GLPTSRSTSS ISAGLIFSQS GGSIPFSDLQ LSSQTSLPLT GSRISRQGRE IRRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g001330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0303910.0BT030391.1 Arabidopsis thaliana At2g47850 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507840.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
RefseqXP_010507841.10.0PREDICTED: zinc finger CCCH domain-containing protein 32 isoform X1
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
STRINGXP_010507840.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein