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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Csa04g067930.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
C3H |
Protein Properties |
Length: 426aa MW: 45083.6 Da PI: 9.2861 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa04g067930.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 38.7 | 1.7e-12 | 46 | 69 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
+C+f+++tGtCk+G++CkF+H++
Csa04g067930.1 46 LPCQFYLKTGTCKFGASCKFHHPK 69
69********************96 PP
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2 | zf-CCCH | 36.4 | 9e-12 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+ +C+++++tG+Ck+G +CkF+H++
Csa04g067930.1 91 ENECSYYLKTGQCKFGITCKFHHPQ 115
678********************97 PP
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3 | zf-CCCH | 38 | 2.8e-12 | 247 | 273 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+++++C+++++tG Ck+G +CkF+H++
Csa04g067930.1 247 PGEPECQYYLKTGDCKFGTSCKFHHPR 273
5799*********************96 PP
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4 | zf-CCCH | 32.6 | 1.4e-10 | 294 | 319 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+ +C f+ ++G+Ck+G++CkF H++
Csa04g067930.1 294 GVQRCTFYVQNGFCKFGSTCKFDHPM 319
6779********************95 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 3.7E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.291 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-6 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-10 | 45 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-5 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-5 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.995 | 88 | 116 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-9 | 91 | 115 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 92 | 116 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-4 | 94 | 114 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-5 | 246 | 273 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.356 | 246 | 274 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-9 | 248 | 273 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 250 | 275 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-5 | 252 | 274 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 292 | 319 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.23 | 292 | 320 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 294 | 323 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-8 | 294 | 319 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-5 | 298 | 318 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 426 aa
Download sequence Send
to blast |
MLAIPSMAHN LLKLLPTGAL LMPIPVSKVE ATVRATGQYP ERFGELPCQF YLKTGTCKFG 60 ASCKFHHPKN AGGSMSHVPL NIYGYPVREG ENECSYYLKT GQCKFGITCK FHHPQPAGTT 120 VPPPPPPPPA SAPQFYPSVQ SLMPDQYGGP SSSLRVARTL LPGSYMQGAY GPMLLTPGVV 180 PIPGWSPYSA PVSPALSPGA QHAVGATSLY GVTQLSSTSP SLPGVYPSLS SPTGVIQKEQ 240 AAFPERPGEP ECQYYLKTGD CKFGTSCKFH HPRDRVPPRA NCILSPIGLP LRPGVQRCTF 300 YVQNGFCKFG STCKFDHPMG TIRYNPSASS LADAPVAPYP VSSLLGALAA APSSSSTELI 360 TGGAKDPYLT GLPTSRSTSS ISAGLIFSQS GGSIPFSDLQ LSSQTSLPLT GSRITRQGRE 420 IRRSF*
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