PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 176aa MW: 20034.4 Da PI: 5.1655

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g067670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65	1.5e-20	45	93	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ +r++lg+f taeeAa+a++ a+ k++g Csa04g067670.1 45 YRGIRQRP-WGKWAAEIRDPRK---GTRVWLGTFKTAEEAARAYDVAAIKIRG 93 9*****.******954...4***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	8.5E-24	44	102	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.6E-34	44	102	IPR001471	AP2/ERF domain
SMART	SM00380	2.0E-41	44	107	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.106	44	101	IPR001471	AP2/ERF domain
Pfam	PF00847	3.3E-14	45	93	IPR001471	AP2/ERF domain
CDD	cd00018	2.34E-35	45	103	No hit	No description
PRINTS	PR00367	2.2E-12	45	56	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.2E-12	67	83	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0034059	Biological Process	response to anoxia
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MCGGAVISDF IWSSQVGSVS SNKKRKPVSG VGGQRDGKRE RKNLYRGIRQ RPWGKWAAEI 60 RDPRKGTRVW LGTFKTAEEA ARAYDVAAIK IRGQKAKLNF PNTSIISDTN QKEMISENHQ 120 VESLLSEEEE ELMAFEDYMR FYQIPFLDDQ STTDLGNLWS FQEEEEEEDC LTTKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-24	45	102	15	73	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g067670.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074645	3e-94	AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010506788.1	1e-112	PREDICTED: ethylene-responsive transcription factor ERF071-like
Refseq	XP_010506789.1	1e-112	PREDICTED: ethylene-responsive transcription factor ERF071-like
Swissprot	O22259	1e-85	ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBL	R0G1V4	4e-88	R0G1V4_9BRAS; Uncharacterized protein
STRING	XP_010506788.1	1e-111	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47520.1	2e-73	ERF family protein

Publications ? help Back to Top
Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Eysholdt-Derzsó E,Sauter M Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis. Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108 [PMID:29996004]