PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g066370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 447aa    MW: 50177.2 Da    PI: 9.9062
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g066370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.4e-07134176346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT+eE ++l + ++ +  + +  Ia +++  Rt +++k+r+++
   Csa04g066370.1 134 VWTKEETDQLFEFCQNFDLR-FVVIADRFPVSRTVEELKDRYYS 176
                      6*******************.*********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF162822.1E-29107181IPR032563DAMP1, SANT/Myb-like domain
SuperFamilySSF466891.39E-6131182IPR009057Homeodomain-like
SMARTSM007179.5E-9131180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.7E-6134177IPR009057Homeodomain-like
CDDcd116582.53E-19135178No hitNo description
PfamPF054996.1E-6324387IPR008468DNA methyltransferase 1-associated 1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGGTDAKDIL GLPKTPLSLS LTQEKKSRPQ KESHRKPDGI SREVYALTGG VAPLMPSIDV  60
TQLKRRPPAD EKVAWQWLPF TSSARKDALQ LYHWVRVVNN VPPTGDYSFA KYNKSVVILK  120
YTDEEYENHL TDPVWTKEET DQLFEFCQNF DLRFVVIADR FPVSRTVEEL KDRYYSVNRA  180
LLRARAQSPA DVANHPLMKE PYDITRDRER KRALSMVLSQ SRHQEKKDAE ILAEAKRITE  240
MRLAARRAEE PVVSANENAG LDKADGVVPG SSVSPSSNSQ LPATAVAPST LTMADYASTL  300
ASLRMLHVYL RTYGLEQMVQ AASSAVGLRT IKRVEQTLQD LGVNLKPKVP TKTVCDEHLE  360
LRKEILTLLN LQKQLQYKES EGSSHREGSF AAMPDTPKDR VFASDPFSFG AERPIKKEQK  420
RKGPGRQADT PSPAHKRPRK MKASDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3hm5_A2e-18106186488DNA methyltransferase 1-associated protein 1
4iej_A2e-18106186488DNA methyltransferase 1-associated protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305|Ref.5}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g066370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0640240.0AY064024.1 Arabidopsis thaliana unknown protein (At2g47210) mRNA, complete cds.
GenBankAY0966100.0AY096610.1 Arabidopsis thaliana unknown protein (At2g47210) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506748.10.0PREDICTED: SWR1-complex protein 4
SwissprotQ8VZL60.0SWC4_ARATH; SWR1-complex protein 4
TrEMBLD7LG020.0D7LG02_ARALL; Myb family transcription factor
STRINGXP_010506748.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85432435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47210.10.0MYB_related family protein
Publications ? help Back to Top
  1. Gómez-Zambrano Á, et al.
    Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes.
    Mol Plant, 2018. 11(6): p. 815-832
    [PMID:29604400]