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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Csa04g066000.1 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
B3 |
| Protein Properties |
Length: 352aa MW: 39169.9 Da PI: 6.6344 |
| Description |
B3 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa04g066000.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 100.2 | 1.2e-31 | 41 | 146 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88
f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ +
Csa04g066000.1 41 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSSNEKGLLLNFEDLTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCvGDsgR 135
89****************************66677899*************************************************44333246 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
+ +l++ ++r+
Csa04g066000.1 136 DSRLFIDWRRR 146
77788888876 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 352 aa
Download sequence Send
to blast |
MMTNLSLSRD GDEEEEDEEE KKPLQEGGEG AREVVEREHM FDKVVTPSDV GKLNRLVIPK 60
QHAERFFPLD SSSNEKGLLL NFEDLTGKSW RFRYSYWNSS QSYVMTKGWS RFVKDKKLDA 120
GDIVSFQRCV GDSGRDSRLF IDWRRRPKVP DHHPHFSAGA MFPRFYSFPS TSYNLYNHQQ 180
QRHHHHHGGG YDYHQIPREF GYGYFVRSVD QRVSSSAAVV ADPLVIESVP VMMHGRANQG 240
LVGTAGKRLR LFGVDMECGE SGMTTNSTEE ESSSSGGSLP RGSGASSSPS LFQLRLGSNX 300
EEESSSSGGS LPRGSGASSS PSLFQLRLGS NSEDDHFSKK GKSSLSFDLD Q*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5os9_A | 5e-79 | 34 | 149 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
| 5os9_B | 5e-79 | 34 | 149 | 1 | 116 | B3 domain-containing transcription factor NGA1 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC004411 | 0.0 | AC004411.3 Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete sequence. |
| GenBank | AC005310 | 0.0 | AC005310.3 Arabidopsis thaliana chromosome 2 clone F19D11 map CIC06C03, complete sequence. |
| GenBank | AK118045 | 0.0 | AK118045.1 Arabidopsis thaliana At2g46870 mRNA for putative RAV-like B3 domain DNA binding protein, complete cds, clone: RAFL19-27-L04. |
| GenBank | BT008534 | 0.0 | BT008534.1 Arabidopsis thaliana clone U50690 putative RAV B3 domain DNA binding protein (At2g46870) mRNA, complete cds. |
| GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
| GenBank | FJ873731 | 0.0 | FJ873731.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA1 (NGA1) mRNA, complete cds. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
Plant Mol. Biol., 2015. 89(4-5): p. 529-38
[PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
Plant J., 2016. 88(3): p. 437-451
[PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth.
Elife, 2017.
[PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
FEBS J., 2018. 285(21): p. 4041-4059
[PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
[PMID:30397148]
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