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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa04g065900.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
NAC |
| Protein Properties |
Length: 414aa MW: 47002.4 Da PI: 5.4092 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa04g065900.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 50.9 | 5.1e-16 | 16 | 63 | 1 | 49 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
+ppGfrFhPt+eel+++yL+kkv++ +++l +vi++vd++k+ePwd+++
Csa04g065900.1 16 VPPGFRFHPTEEELLQYYLRKKVNSIEIDL-DVIRDVDLNKLEPWDIQE 63
69****************************.99**************83 PP
|
| 2 | NAM | 166.7 | 7.7e-52 | 82 | 210 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92
+ppGfrFhPt+eel+++yL+kkv++ +++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk +
Csa04g065900.1 82 VPPGFRFHPTEEELLQYYLRKKVNSIEIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKII 175
69****************************.99**************962433332455************************************ PP
NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+s +g+ +g++ktLvfykgrap+g+k+dW+mheyrl
Csa04g065900.1 176 YS-NGRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 210
**.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 414 aa
Download sequence Send
to blast |
MMSKSMSISV NGQSQVPPGF RFHPTEEELL QYYLRKKVNS IEIDLDVIRD VDLNKLEPWD 60
IQEISLMMSK SMSISVNGQS QVPPGFRFHP TEEELLQYYL RKKVNSIEID LDVIRDVDLN 120
KLEPWDIQEM CKIGTTPQND WYFFSHKDKK YPTGTRTNRA TAAGFWKATG RDKIIYSNGR 180
RIGMRKTLVF YKGRAPHGQK SDWIMHEYRL DDNIISHEDV TVHETVSQHM MNFADISYFX 240
RDVDLNKLEP WDIQGASLSG GGDTTRSSQI FNEDTLEQFL ELMGRSCKEE LNLDPFMKLP 300
NLESPSSQTI NNSCHVSTPD TNHNIHVSNV VDTSFVTSWA ALDRLVASQL NGPTSYSIAP 360
VDQDHPYPSL NRSASYHAGL PQEYTPEMEL WNTTTSSLSS SPGPFCHVSN GSG*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT002931 | 0.0 | BT002931.1 Arabidopsis thaliana clone RAFL15-02-N12 (R20259) putative NAM (no apical meristem) protein (At2g46770) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Gondolf VM, et al.
A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
BMC Plant Biol., 2014. 14: p. 344
[PMID:25492673] - Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
GM Crops Food, 2014. 5(4): p. 302-20
[PMID:25523176] - Yuan Y,Teng Q,Zhong R,Ye ZH
TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
Plant Cell Physiol., 2016. 57(1): p. 35-45
[PMID:26556650] - Yang C, et al.
Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
Plant Physiol., 2017. 175(1): p. 333-350
[PMID:28724622] - Pascual MB, et al.
PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
[PMID:29055073] - Liu C,Yu H,Li L
SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
PLoS Genet., 2019. 15(1): p. e1007928
[PMID:30657769]
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