PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 304aa MW: 34081 Da PI: 5.0237

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g065370.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.3	8.2e-18	118	168	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdps r +r +lg+f taeeAa +++a+ +l+g+ Csa04g065370.1 118 KYRGVRQRP-WGKYAAEIRDPS----RrTRLWLGTFATAEEAAIGYDRAAIRLKGH 168 8******.******84....34***********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	4.13E-31	118	174	No hit	No description
SuperFamily	SSF54171	5.17E-20	118	175	IPR016177	DNA-binding domain
SMART	SM00380	6.3E-35	118	181	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.2E-29	118	174	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.878	118	175	IPR001471	AP2/ERF domain
Pfam	PF00847	2.0E-11	118	168	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.8E-10	119	130	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.8E-10	141	157	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MPQRPNAYGA NSFVIALSSS RERKVKYTVH RKITSLPFNG FPKTVKIIVT DPCATDSSSD 60 DEEYDNKSLP PRVKRFVEEI RFCNDDGGGG DKLERKVKSK SETAENGCDL VVKPTVVKYR 120 GVRQRPWGKY AAEIRDPSRR TRLWLGTFAT AEEAAIGYDR AAIRLKGHNA QTNFLTPPPP 180 PPPPPVIDFE TVSGCDSARE SQISSSLCSP TSVLRFGHNE ETEFRTEPLK QEEEALSSDP 240 FFLPDLFRSG DCFWDSKFTP DPLFLLDETT HNNTVSESFP LGVIGDFSSW DVDEFFQDHL 300 FDN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-21	119	174	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	5e-21	119	174	6	62	ATERF1
3gcc_A	5e-21	119	174	6	62	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g065370.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinins. {ECO:0000269\|PubMed:16832061}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010506631.1	0.0	PREDICTED: ethylene-responsive transcription factor CRF5-like
Swissprot	O82339	1e-140	CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBL	R0FY07	1e-149	R0FY07_9BRAS; Uncharacterized protein
STRING	XP_010506631.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2578	25	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46310.1	1e-137	cytokinin response factor 5

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Striberny B, et al. Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain. Plant Signal Behav, 2017. 12(2): p. e1276684 [PMID:28045578]