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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g064930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | BES1 | ||||||||
Protein Properties | Length: 693aa MW: 77291 Da PI: 6.5716 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 156.5 | 1.8e-48 | 64 | 217 | 1 | 145 |
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl..eeaeaagssas..a 88 ggs+r+++ +E+E++k+RER+RRai+a+i+ GLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +g+kp+ ++a aagssas a Csa04g064930.1 64 GGSRRSRPLEEKERTKLRERHRRAITARILGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsksQGTKPPggSSAVAAGSSASyiA 158 689******************************************************************98889999999888899999998886 PP DUF822 89 spesslq..sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlsl 145 s+++s +++s +spve +s+++k + p ps +d +++s++ +++v + ++l Csa04g064930.1 159 SQQTSPPalRVVSSVGHRSPVELSSCRMKGVFAPGPSPYDIPPTQSPELVSSVNKADGL 217 77766666556677899****************************99877777776655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 7.8E-40 | 65 | 195 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 4.33E-173 | 242 | 691 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 1.5E-186 | 245 | 688 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 6.2E-95 | 251 | 671 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.7E-64 | 282 | 296 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.7E-64 | 303 | 321 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.7E-64 | 325 | 346 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 329 | 337 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00750 | 2.7E-64 | 418 | 440 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.7E-64 | 491 | 510 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.7E-64 | 525 | 541 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.7E-64 | 542 | 553 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.7E-64 | 560 | 583 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 2.7E-64 | 600 | 622 | IPR001554 | Glycoside hydrolase, family 14 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 693 aa Download sequence Send to blast |
MATDMHKLLG TSEEDDDEDM DMDVKEEDDD HRNRGTTRAA SGSSNEEFMF QQSMQDQVGT 60 PGGGGSRRSR PLEEKERTKL RERHRRAITA RILGGLRRHG NYNLRVRADI NDVIAALARE 120 AGWVVLPDGT TFPSKSQGTK PPGGSSAVAA GSSASYIASQ QTSPPALRVV SSVGHRSPVE 180 LSSCRMKGVF APGPSPYDIP PTQSPELVSS VNKADGLVGC SVDVINSKQI LEIPPNLTEQ 240 DFSGTPYVPV YVMLPLGVIN MKCELADRDG LLKHLRILKS IHVDGVKVDC WWGIVEGHSP 300 QEYNWNGYRQ LFQMVRDLNL KIQVLMSFHE CGGNVGDDVC IPLPHWVAEI GRTNPDIYFT 360 DREGRRNPEC LSWGIDKERI LRGRTALEVY FDYMRSFRIE LAEFVEDGVI SMVEIGLGPC 420 GELRYPSCPI KHGWRYPGVG EFQCYDKYLL KSLRKAADSR GHLFWARGPD NTGSYNSQPQ 480 GTGFFCDGGD YDGLYGRFFL KWYSQVLIDH ADQILSLAKL VFNSSCIAAK LPDVHWWYRT 540 ASHAAELTAG FYNPSNRDGY AAIASTLKKH GATLSFVSGE VQVLNRPDDF SGALGEPEAV 600 AWQVLNAAWD SDTPIARENS LPCHDRVGYN KMLESVKFPN DPDRRQLSSF AYSRLIPALM 660 EGHNIVEFER FVKKLHGETV MNHHHHHHHQ QV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdq_A | 1e-139 | 247 | 678 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g064930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227323 | 0.0 | AK227323.1 Arabidopsis thaliana mRNA for putative beta-amylase, complete cds, clone: RAFL14-01-P19. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506568.1 | 0.0 | PREDICTED: beta-amylase 7-like | ||||
Refseq | XP_019100643.1 | 0.0 | PREDICTED: beta-amylase 7-like | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | R0HB94 | 0.0 | R0HB94_9BRAS; Beta-amylase | ||||
STRING | XP_010506568.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2945 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Publications ? help Back to Top | |||
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