PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g063560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 501aa    MW: 54971.9 Da    PI: 9.1564
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g063560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.1e-06166188326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     ++ C+++ + G Ck  ++C F H+
  Csa04g063560.1 166 ESVCKYWKA-GNCKKSEQCEFLHS 188
                     678******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.2E-5162188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.671163190IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-6163189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.08E-6164188IPR000571Zinc finger, CCCH-type
SMARTSM003200.0031194233IPR001680WD40 repeat
SuperFamilySSF509786.23E-40196245IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.0E-39197495IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004000.0058198233IPR001680WD40 repeat
PROSITE profilePS5008212.146201242IPR001680WD40 repeat
PROSITE profilePS5029411.445201242IPR017986WD40-repeat-containing domain
PRINTSPR003201.2E-6220234IPR020472G-protein beta WD-40 repeat
SuperFamilySSF509786.23E-40297496IPR017986WD40-repeat-containing domain
SMARTSM003202.7E-5330367IPR001680WD40 repeat
PfamPF004002.5E-4332367IPR001680WD40 repeat
PROSITE profilePS5029419.723337500IPR017986WD40-repeat-containing domain
PROSITE profilePS5008212.213337376IPR001680WD40 repeat
PRINTSPR003201.2E-6354368IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780354368IPR019775WD40 repeat, conserved site
SMARTSM003204.6E-5370407IPR001680WD40 repeat
PfamPF004004.5E-4372406IPR001680WD40 repeat
PROSITE profilePS500829.406377416IPR001680WD40 repeat
PRINTSPR003201.2E-6394408IPR020472G-protein beta WD-40 repeat
SMARTSM0032084413454IPR001680WD40 repeat
SMARTSM0032015458494IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MNHKAPRKGR NFGVVRQQDF AVDIVPRSPS VPYDKRVRKG PYNGSRNLVW TSKEFQTSQG  60
NRPRKNGPYG SMNSPVSSTE YRVSNQPRKN DAYKPMNSPV SSSGYRVSNQ PRKNEAYKPM  120
ISPVSGTGYR VSDQPRNNGF YGSRSSTISG SRVWTSEDNG SPKSRESVCK YWKAGNCKKS  180
EQCEFLHSWC CFPGLVMVAT LEGHKKDIKG IALPQGSDKL YSFSGDGVLR IWDCHTGQSV  240
HEINLQAEAG SLISEGPWVF LGLPNAVKAF NVQTREDLHL NGSVGGQVNA MAVGHGMLCA  300
GTSVSLLTHS NFTYSGSISV WKVTDTESDP FKYLTSLEGH SGEVKCFVVG GQRLYSGSVD  360
KTIKVWDLDT LQCVMTLRQH SNTVTSLLCW DQYLLSSSLD GTIKVWGSSE SPNLKVIHTR  420
SQEQSVHALC GLHDAEARPI IFCSYQNGTV GIYDLPSFEE RGKMFSTHTM GTLTIGPEGL  480
LFSGDMGGKV RVWSLGGSKE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-1420049510323Tako8
6g6n_A1e-1420049510323Tako8
6g6n_B1e-1420049510323Tako8
6g6n_C1e-1420049510323Tako8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g063560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100641.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A087H5G00.0A0A087H5G0_ARAAL; Uncharacterized protein
STRINGA0A087H5G00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein