PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g062760.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 294aa MW: 34011.9 Da PI: 7.1818

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g062760.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	38.5	2e-12	45	128	11	97
HHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 11 lksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++++ lp f++++ + + ++++t+++ +s++ W+++++ ++ s+ ++l++GWk+ vk+ ++ e f+vF++dg++ f ++ v+ Csa04g062760.1 45 FTEDNMNLP--FVSDNTSGMHLPQKVTVKSvSSSNIWRMEMTTNGESDDVFLRDGWKKIVKDENITEPVFLVFEFDGSRLF--HFCVY 128 455555554..88888555568899***7777***99*****************************9986666..66655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	9.61E-14	36	130	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.1E-11	36	130	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.76E-7	37	128	No hit	No description
SMART	SM01019	9.8E-8	37	131	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.827	37	131	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-9	48	127	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.7E-6	196	291	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.1E-7	197	277	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MYMYSPGVGC IIISLSLSLS TEKMKTQGSN VDLIQKFFRV YIPNFTEDNM NLPFVSDNTS 60 GMHLPQKVTV KSVSSSNIWR MEMTTNGESD DVFLRDGWKK IVKDENITEP VFLVFEFDGS 120 RLFHFCVYEH SSMCKRTRFL MEKEVIDVES EEEIEDDDES TKEFDESPRR KERGGTSRQR 180 LKTDSHKVDE YLDDELNPSF PVDMTQSRST RIPSLLIKDY NLTFPNLVTV RDKIGKLKRK 240 ILVSKNKSVY LSGLRSFIRR NHVKKGDQMF CELKMVDGYQ GLVHEIKVHI IKG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g062760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010506425.1	0.0	PREDICTED: B3 domain-containing protein REM22
Swissprot	Q9STF1	1e-128	REM22_ARATH; B3 domain-containing protein REM22
TrEMBL	R0FY44	1e-138	R0FY44_9BRAS; Uncharacterized protein
STRING	XP_010506425.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16649	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46770.1	1e-117	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]