PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g062580.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 400aa    MW: 43475.7 Da    PI: 9.0364
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g062580.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix673.7e-2172163187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqlea 87 
                     +W+ +e+ aLi+++r+++ +l+rg+lk+++Weev++++     +   +++++qC++k+e+l+kry+ + +++++   ++  s++++f+++ea
  Csa04g062580.1  72 CWSLEETVALIDGYRDKWYALNRGNLKANHWEEVAEAVgtscPDVTPKKTAVQCRHKMEKLRKRYRTEIQRARSVpVARFISSWVHFKRMEA 163
                     7************************************9998888889***************************977999**********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-1971164No hitNo description
PROSITE profilePS500906.20273133IPR017877Myb-like domain
SMARTSM005953.3E-1580169IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MSDPDSPMNH DPIPDPSPVR IQSSPPSALV PPSLSSPAQD DASAEPVSVT DLKSASVPSA  60
ASKNSRRLPP PCWSLEETVA LIDGYRDKWY ALNRGNLKAN HWEEVAEAVG TSCPDVTPKK  120
TAVQCRHKME KLRKRYRTEI QRARSVPVAR FISSWVHFKR MEAMENRPEI IKQGNESGDD  180
EDHDDDGNYT ARYQFKNGGG GGRGSVARTT PRFFNRNGTA GSGSSSGGIR IRIPTGVSVA  240
QPGPRFPGKI DQKYTASPSS GMSSNPRPGR GLGAGAGGGS SYSARVGRIP EGGGGGKRGR  300
EMMMKTEEDD DDDGGNDPMV EIASAIKLLG DTMLRTEQTR MEMTREIEAM RMDTEMKRTK  360
MILESQQRIV EAFSKTIAEN TEETMKKKAR RMAAADSLD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g062580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010506405.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLR0FV430.0R0FV43_9BRAS; Uncharacterized protein
STRINGXP_010506405.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-170Trihelix family protein