PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g060890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 214aa MW: 24788 Da PI: 7.4625 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.5 | 8.4e-27 | 44 | 132 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y++++GF +r+ + ++s+++g+i r+f C+keg+ + + k + r++r++tr gCka+++vk +++gkw++tk+++eHnH+l+ Csa04g060890.1 44 FYDDYSRRLGFVMRVMSCRRSEKDGKILARRFGCNKEGHCISIRGKLGSVRKPRPSTREGCKAMIHVKYDRSGKWVITKFVKEHNHPLV 132 9**************************************99999999****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-24 | 44 | 132 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MEDEEDPAAT KKNSSNNTDD DDDDFDIEPR EGIEFESEDA AKIFYDDYSR RLGFVMRVMS 60 CRRSEKDGKI LARRFGCNKE GHCISIRGKL GSVRKPRPST REGCKAMIHV KYDRSGKWVI 120 TKFVKEHNHP LVVSPREARQ TLDEKDKRIQ ELTIELRNKK RLCAAYREQL DAFARIVEEH 180 SDQIAKKVEN VVNSLKEFEP IDRELLRSKQ DAI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g060890.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002891 | 0.0 | BT002891.1 Arabidopsis thaliana clone RAFL14-97-G02 (R20421) unknown protein (At2g43280) mRNA, complete cds. | |||
GenBank | BT004409 | 0.0 | BT004409.1 Arabidopsis thaliana clone U20421 unknown protein (At2g43280) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010506193.1 | 1e-156 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Swissprot | Q9SZL8 | 2e-25 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | R0FYQ4 | 1e-136 | R0FYQ4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010506193.1 | 1e-156 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-133 | FAR1 family protein |
Publications ? help Back to Top | |||
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