PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g057930.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 286aa MW: 31959.1 Da PI: 6.6071

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g057930.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.2	1.1e-10	195	237	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 kr +r NR +A+rsR RK+++i eLe+ v +L+ae + L Csa04g057930.2 195 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSP 237 8999********************************9877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-13	191	255	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.622	193	245	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	3.4E-9	193	240	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.88E-11	195	249	No hit	No description
Gene3D	G3DSA:1.20.5.170	8.0E-13	195	246	No hit	No description
CDD	cd14703	1.00E-25	196	246	No hit	No description
PROSITE pattern	PS00036	0	198	213	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MAQLPPKIPN MTPHWPDFSS QKLSPFSTPI ATASATTTAV QNPSWVDEFL DFSASRRGNH 60 RRSISDSITF LEAPTVSDHA SIENHHFDRF DDEQFMLMFT DDDNLHKTPS HINNDNNNIL 120 GPTGSSSNTS TPSNSINDDK NEPPSNHDMT NNYKNNNNNI NNDEVQSQCK TEPDDGTAST 180 NNSGNSSGNR ILDPKRVKRI LANRQSAQRS RVRKLQYISE LERSVTSLQA EVSVLSPRVA 240 FLDHQRLLLN VDNSALKQRI AALSQDKIFK DGKFSFSLSY SLFTY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g057930.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019100580.1	0.0	PREDICTED: basic leucine zipper 34-like, partial
Swissprot	F4IN23	1e-139	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	R0FXS2	1e-153	R0FXS2_9BRAS; Uncharacterized protein
TrEMBL	R0HQG6	1e-153	R0HQG6_9BRAS; Uncharacterized protein
STRING	XP_010506063.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.2	1e-127	bZIP family protein

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]