PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g055500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 265aa    MW: 29728.8 Da    PI: 8.4588
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g055500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.64.8e-17194238550
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                     +r++r++kNRe+A rsR+RK+a++ eLe kv+ Le+eN++L+ +l+
  Csa04g055500.1 194 RRQKRMIKNRESAARSRARKQAYTHELEIKVERLEEENEKLR-KLK 238
                     79***************************************9.444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.1E-15187236No hitNo description
SMARTSM003381.6E-12190246IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.369192236IPR004827Basic-leucine zipper domain
CDDcd147071.82E-22194239No hitNo description
SuperFamilySSF579591.0E-10194236No hitNo description
PfamPF001704.5E-14194236IPR004827Basic-leucine zipper domain
PROSITE patternPS000360197212IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGSIRGNIDQ EPISQSLTRQ NSLYSLKLHE VQTHLGSSGK PLGSMNLDEL LKTVLSPAEE  60
EGLVRQGSLT LPRDLSKKTV DEVWRDIQLD KNGNTTTSTT TAHKQPTLGE ITLEDLLLKA  120
GVVTETIAPQ ENVVNIASHG QWVEYHQPGQ QQGFMPYPVC EMQEIVMMGG LSDTPKAHGR  180
KRVAGDIVEK TVERRQKRMI KNRESAARSR ARKQAYTHEL EIKVERLEEE NEKLRKLKEV  240
ETILPSEPPP DPKWKLRRTN SASL*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g055500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3342090.0AF334209.1 Arabidopsis thaliana bZIP protein DPBF4 mRNA, complete cds.
GenBankAY0846680.0AY084668.1 Arabidopsis thaliana clone 114632 mRNA, complete sequence.
GenBankBT0251750.0BT025175.1 Arabidopsis thaliana At2g41070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505871.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 3
SwissprotQ9C5Q21e-167AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLR0HR061e-172R0HR06_9BRAS; Uncharacterized protein
STRINGXP_010505871.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18842883
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.31e-150bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  3. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]