PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g055360.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 730aa MW: 78912.4 Da PI: 5.6947

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g055360.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.3	1.4e-12	231	292	1	62
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 e++ k+ r+++NRe+A+ sRqRKk ++eeLeekv ++ + ++L +++ e a+l+++ Csa04g055360.1 231 EEDEKKKARLMRNRESAQLSRQRKKHYVEELEEKVRNMHSTITDLNGKMSYVMAENATLRQQ 292 678899**********************************9999999999999888888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.2E-15	231	295	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.7E-10	232	293	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.208	233	293	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.4E-16	235	293	No hit	No description
SuperFamily	SSF57959	1.0E-11	235	293	No hit	No description
CDD	cd14704	3.48E-21	236	287	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence Send to blast
MAEPITEQPP PPAPDPNSTH PPPSDFDSIS IPTFDDHFGS DQTPIGELMS DLGFPDGEFE 60 LTFDGMDDLY FPAENESFLI PINTSTQEHF GDFTPDSEAS GISGDSLLLP TTKDDAVTTS 120 GCCNRESPRE DSDDRCSGAD RSLDLPTPLS SQGSGNCGSD VSEATNESSP KSGNVVVDQK 180 VKVEEAVATT TTASIITKRK KEIEEDLSDE SRNSKYRRSG EDADASAVTG EEDEKKKARL 240 MRNRESAQLS RQRKKHYVEE LEEKVRNMHS TITDLNGKMS YVMAENATLR QQLGGNGMCP 300 PHHPPPPMAM YPPMAPMPYP WMPCPPYMVK QQGSQVPLIP IPRLKPQNPL GTSKAKKSES 360 KKSEAKTKKV ASISFLGLLF CLFLFGALAP IVDVNFGGIS GAFYGNYRSN YITDQVYSQH 420 RDRVLDASRS GAGTGVSNSN SGIHCGGDSD QGTRKNISAT ESSVPPGNGS EPLVASLFVP 480 RNDKLVKIDG NLIINSILAS EKAVASRKAS ESNERNADLV IPKDYSPALP LPDVRRTEEM 540 AKHLYRSKTE KQKALSSGSA DTLKDQFKTI AANGEMQQWF REGVAGPMFS SGMCTEVFQF 600 DVSSTSGAII PATPATNVSA VHSKNTTDTH KRKNRRILRG LPIPLPGSDF NLTKEHQRNS 660 SSKDIKPASS MVVSVLVDPR EGGDGDIEGM IGGPKSLSRV FVVVLLDSAK YVTYSCVLPR 720 SGAPHLVTT*

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence Send to blast

MAEPITEQPP PPAPDPNSTH PPPSDFDSIS IPTFDDHFGS DQTPIGELMS DLGFPDGEFE  60
LTFDGMDDLY FPAENESFLI PINTSTQEHF GDFTPDSEAS GISGDSLLLP TTKDDAVTTS  120
GCCNRESPRE DSDDRCSGAD RSLDLPTPLS SQGSGNCGSD VSEATNESSP KSGNVVVDQK  180
VKVEEAVATT TTASIITKRK KEIEEDLSDE SRNSKYRRSG EDADASAVTG EEDEKKKARL  240
MRNRESAQLS RQRKKHYVEE LEEKVRNMHS TITDLNGKMS YVMAENATLR QQLGGNGMCP  300
PHHPPPPMAM YPPMAPMPYP WMPCPPYMVK QQGSQVPLIP IPRLKPQNPL GTSKAKKSES  360
KKSEAKTKKV ASISFLGLLF CLFLFGALAP IVDVNFGGIS GAFYGNYRSN YITDQVYSQH  420
RDRVLDASRS GAGTGVSNSN SGIHCGGDSD QGTRKNISAT ESSVPPGNGS EPLVASLFVP  480
RNDKLVKIDG NLIINSILAS EKAVASRKAS ESNERNADLV IPKDYSPALP LPDVRRTEEM  540
AKHLYRSKTE KQKALSSGSA DTLKDQFKTI AANGEMQQWF REGVAGPMFS SGMCTEVFQF  600
DVSSTSGAII PATPATNVSA VHSKNTTDTH KRKNRRILRG LPIPLPGSDF NLTKEHQRNS  660
SSKDIKPASS MVVSVLVDPR EGGDGDIEGM IGGPKSLSRV FVVVLLDSAK YVTYSCVLPR  720
SGAPHLVTT*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in salt and osmotic stress responses. Functions as a stress sensor and transducer in a signaling pathway that resembles an ER stress response. Following salt stress, BZIP17 is cleaved by SBT6.1 (S1P) and S2P at the C-terminus and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression of salt stress response genes (PubMed:17662035). Functions as a stress sensor and transducer in ER stress signaling pathway. ER stress induces proteolysis of BZIP17 by SBT6.1 (S1P) and S2P, and the N-terminal bZIP component is translocated to the nucleus, where it activates the expression and production of ER chaperones, as well as protein involved in brassinosteroid (BR) signaling, which is required for stress acclimation and growth (PubMed:20876872). {ECO:0000269\|PubMed:17662035, ECO:0000269\|PubMed:20876872}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g055360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY136295	0.0	AY136295.1 Arabidopsis thaliana putative TGACG-sequence-specific bZIP DNA-binding protein (At2g40950) mRNA, complete cds.
GenBank	BT000408	0.0	BT000408.1 Arabidopsis thaliana putative TGACG-sequence-specific bZIP DNA-binding protein (At2g40950) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010505855.1	0.0	PREDICTED: bZIP transcription factor 17-like
Swissprot	O22208	0.0	BZP17_ARATH; bZIP transcription factor 17
TrEMBL	A0A178VQX7	0.0	A0A178VQX7_ARATH; BZIP17
TrEMBL	D7LGH5	0.0	D7LGH5_ARALL; BZIP transcription factor family protein
STRING	XP_010505855.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8881	27	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	0.0	bZIP family protein

Publications ? help Back to Top
Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792] Sagor GH, et al. The polyamine spermine induces the unfolded protein response via the MAPK cascade in Arabidopsis. Front Plant Sci, 2015. 6: p. 687 [PMID:26442007] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Kim JS,Yamaguchi-Shinozaki K,Shinozaki K ER-Anchored Transcription Factors bZIP17 and bZIP28 Regulate Root Elongation. Plant Physiol., 2018. 176(3): p. 2221-2230 [PMID:29367234] Cifuentes-Esquivel N, et al. bZIP17 regulates the expression of genes related to seed storage and germination, reducing seed susceptibility to osmotic stress. J. Cell. Biochem., 2018. 119(8): p. 6857-6868 [PMID:29693271] Guan P, et al. SENSITIVE TO SALT1, An Endoplasmic Reticulum-Localized Chaperone, Positively Regulates Salt Resistance. Plant Physiol., 2018. 178(3): p. 1390-1405 [PMID:30287478]