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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g053240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | AP2 | ||||||||
Protein Properties | Length: 323aa MW: 36381.2 Da PI: 9.508 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 104 | 153 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g Csa04g053240.1 104 SHYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYTAARAYDRAAIKFRG 153 79*******************......55************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.81E-15 | 104 | 161 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.9E-9 | 104 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.713 | 105 | 161 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-16 | 105 | 160 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.55E-23 | 105 | 160 | No hit | No description |
SMART | SM00380 | 4.9E-29 | 105 | 167 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MLDLNLGILS THNGDEDCKV PTSIFNQEEE DSNNPSNNSL SLITFGILKR KEDVLILPMP 60 PPPQESELSG AGSEWLNLSS MQRNKQDMLV VKKKSRRGPR SRSSHYRGVT FYRRTGRWES 120 HIWDCGKQVY LGGFDTAYTA ARAYDRAAIK FRGFQADINF IVDDYKQDFE KMKNLSKEEF 180 VQTLRRASAS LARGGSKYKY SYMKNDHIHL FHNREWNAAA AKCNEIRKIE GDIKLGAHNK 240 GNEHNDLELS LGISSTSKNI TLKPADDYMG LNRSMTTSLH RKALPVYLPI TETKPLKTVV 300 ASSGFPFIAM INSSSLSTCF DP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g053240.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY576276 | 0.0 | AY576276.1 Arabidopsis thaliana AP2 domain transcription factor (SNZ) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505591.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor SNZ | ||||
Swissprot | Q6PV67 | 0.0 | SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ | ||||
TrEMBL | D7LCG4 | 0.0 | D7LCG4_ARALL; Uncharacterized protein | ||||
STRING | XP_010505591.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10858 | 18 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39250.1 | 1e-161 | AP2 family protein |
Publications ? help Back to Top | |||
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