PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g052000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 342aa    MW: 38587.9 Da    PI: 9.4773
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g052000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.36.2e-3251104255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     prlrWtp+LH rFv+ave+LGG+e+AtPk ++++m++kgL+++hvkSHLQ+YR+
  Csa04g052000.1  51 PRLRWTPDLHLRFVRAVERLGGQERATPKLVRQMMNIKGLSIAHVKSHLQMYRS 104
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.75947107IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2947105IPR009057Homeodomain-like
SuperFamilySSF466891.97E-1449105IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2251106IPR006447Myb domain, plants
PfamPF002491.2E-952103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MISSMEGGEK TDREEEEDEG EGQESKASSN STVEESDKKT KVRPYVRSKV PRLRWTPDLH  60
LRFVRAVERL GGQERATPKL VRQMMNIKGL SIAHVKSHLQ MYRSKKIDDH GQAISDHKHL  120
FDTSTDRNIY KLSQLPMFRG YNHNSDSPFR YGSKFPNASL WSSSSHETNR SLIDQIRPGL  180
IRSSSVTNNI RGSEYWTNNR SFQNIHSSSV SNHLPKLRHD HQERTNSVGI QGHSSRTLEK  240
FQIGVEERIN MHAYCNKTTG KRNASTSIDL DLNLSLKITQ PEKTVSEETE SAATTTDQTL  300
SLSLCPGSSA LKKSRLINTD DEEDRTVKSG CRQASTLDLT L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A6e-1652106357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-1652106357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-1652106357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-1652106357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00297DAPTransfer from AT2G38300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g052000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505450.10.0PREDICTED: two-component response regulator ARR18-like isoform X1
TrEMBLR0HTS20.0R0HTS2_9BRAS; Uncharacterized protein
STRINGXP_010505450.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-180G2-like family protein