PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g049820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 361aa MW: 40769.1 Da PI: 4.2597 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 98.6 | 6e-31 | 49 | 142 | 3 | 97 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +++ ws++De+v+L G++d++++t++s+ +d+ a+y+++k+++++k+sk q+++K++rLK+Kf ++ ++++gk++sf+ ++d++if+ls++iW Csa04g049820.1 49 SKMNWSKNDELVILGGIVDYEMETKSSYISDWAALYRYIKDNVEAKFSK-QFIDKVKRLKRKFIYNQGRSNDGKDVSFTDTDDDEIFKLSMMIWA 142 7899*******************************************97.9*******************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.5E-22 | 51 | 141 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MVATKRFGDH SNSSSDDSKR ADDVEATHRT RKQLKTTTTT TTLKPSSASK MNWSKNDELV 60 ILGGIVDYEM ETKSSYISDW AALYRYIKDN VEAKFSKQFI DKVKRLKRKF IYNQGRSNDG 120 KDVSFTDTDD DEIFKLSMMI WAKSETEHVV SNEDMDQAKD VPSGEQENVP CAEQERVSVE 180 IDNGEKEKLD QAKDVPCAEQ EDKDVPCAEQ EDKDVPCAEQ EDKDVPCAEQ EQVSNEIDDN 240 GEQEMIEEDG VDELGVMEDT LESVISFQSL AKNGEKDKSE EDGVGELGVL LEILEADTFY 300 QNCSKYQQKL LRQNLENVGA ERRKELIDEW KALLVQEMKL SIKKFNFMAK FANAGVGVSP 360 * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g049820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010505166.1 | 0.0 | PREDICTED: GLABROUS1 enhancer-binding protein-like 3 | ||||
Swissprot | Q9SJM4 | 1e-157 | STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3 | ||||
TrEMBL | R0FWQ6 | 1e-158 | R0FWQ6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010505166.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12440 | 15 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36340.1 | 1e-149 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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