PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g049820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 361aa    MW: 40769.1 Da    PI: 4.2597
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g049820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.66e-3149142397
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     +++ ws++De+v+L G++d++++t++s+ +d+ a+y+++k+++++k+sk q+++K++rLK+Kf  ++ ++++gk++sf+ ++d++if+ls++iW 
  Csa04g049820.1  49 SKMNWSKNDELVILGGIVDYEMETKSSYISDWAALYRYIKDNVEAKFSK-QFIDKVKRLKRKFIYNQGRSNDGKDVSFTDTDDDEIFKLSMMIWA 142
                     7899*******************************************97.9*******************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-2251141IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MVATKRFGDH SNSSSDDSKR ADDVEATHRT RKQLKTTTTT TTLKPSSASK MNWSKNDELV  60
ILGGIVDYEM ETKSSYISDW AALYRYIKDN VEAKFSKQFI DKVKRLKRKF IYNQGRSNDG  120
KDVSFTDTDD DEIFKLSMMI WAKSETEHVV SNEDMDQAKD VPSGEQENVP CAEQERVSVE  180
IDNGEKEKLD QAKDVPCAEQ EDKDVPCAEQ EDKDVPCAEQ EDKDVPCAEQ EQVSNEIDDN  240
GEQEMIEEDG VDELGVMEDT LESVISFQSL AKNGEKDKSE EDGVGELGVL LEILEADTFY  300
QNCSKYQQKL LRQNLENVGA ERRKELIDEW KALLVQEMKL SIKKFNFMAK FANAGVGVSP  360
*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g049820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505166.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like 3
SwissprotQ9SJM41e-157STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLR0FWQ61e-158R0FWQ6_9BRAS; Uncharacterized protein
STRINGXP_010505166.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.11e-149DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]