PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Protein Properties

Length: 247aa MW: 28619.4 Da PI: 6.9283

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g049540.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	102.4	2.5e-32	39	144	1	99
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k ltpsdv+k++rlv+pk++ae++ + e++ l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ Csa04g049540.1 39 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaaaDA-VEKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKNLDAGDVVLFHRHRA 132 99***************************99644.46888*********************************************8877 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 ++++++++++r+ Csa04g049540.1 133 DGGRFFIGWRRR 144 9999****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	5.5E-41	33	152	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.8E-31	36	144	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.59E-27	38	134	No hit	No description
PROSITE profile	PS50863	14.212	39	145	IPR003340	B3 DNA binding domain
SMART	SM01019	2.5E-24	39	145	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.1E-29	39	144	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0080167	Biological Process	response to karrikin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MSITQYSSDF HYHSLMWQQQ QQQQHHHQND VVEEKEALFE KPLTPSDVGK LNRLVIPKQH 60 AERYFPLAAA AADAVEKGLL LCFEDEEGKP WRFRYSYWNS SQSYVLTKGW SRYVKEKNLD 120 AGDVVLFHRH RADGGRFFIG WRRRGDSSSS SDSYRHHQSN ASLQYHPHAG AQAVESQRVN 180 SKTLRLFGVN MECQLDSDWS EPSTPDGSNT CTTNHDQFHF YPQQQQHYPP PYYMDLSFTG 240 DVNRTS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	3e-49	32	144	1	113	B3 domain-containing transcription factor NGA1
5os9_B	3e-49	32	144	1	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g049540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117587	0.0	AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010505139.1	0.0	PREDICTED: B3 domain-containing protein At2g36080
Refseq	XP_010516819.1	0.0	PREDICTED: B3 domain-containing protein At2g36080
Swissprot	Q8GYJ2	1e-154	Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBL	R0HR36	1e-155	R0HR36_9BRAS; Uncharacterized protein
STRING	XP_010505139.1	0.0	(Camelina sativa)
STRING	XP_010516819.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1220	28	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.1	1e-126	B3 family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Tanaka M, et al. The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation. Plant Cell, 2016. 28(11): p. 2830-2849 [PMID:27760805]