PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g049030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 326aa    MW: 37266.5 Da    PI: 9.8041
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g049030.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.14.1e-1722101272
        trihelix   2 WtkqevlaLiearremeer.lrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72 
                     Wt +e+l+Liea++  eer +rr++        +++ +W+++ +++++rg++r+++qC++kw+nl + ykki+e e++r 
  Csa04g049030.1  22 WTVSETLVLIEAKEMEEERrVRRSEkktenrnkSIELRWKWIEEYCWRRGCQRNQNQCNDKWDNLMRGYKKIREYERSRI 101
                     *************9544440444323444444499*****************************************9983 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1551487IPR017877Myb-like domain
PfamPF138371.3E-1121105No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAEPSGGGAR EMVMREYRKG NWTVSETLVL IEAKEMEEER RVRRSEKKTE NRNKSIELRW  60
KWIEEYCWRR GCQRNQNQCN DKWDNLMRGY KKIREYERSR IESSFNTGSS SSRPASYWKM  120
EKSERKERSL PSNMLSRIYD ALAELVEKKT LPYGNGGQIL RVCQEFVAPM MAQAMHQIPT  180
TIVLSLQSPP PPQPLVLSHP PLPQPPLFTF HAEPIQPTVD TSGAKRRRTT TPRETTTKQG  240
ESTEDAEVMV GAAISRSALV VAQVIKESEE RQEMRHKEVM RLQERRLKME ESKADINRQG  300
MSGLVDAINQ LATSILALAS SSSLP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g049030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505080.10.0PREDICTED: uncharacterized protein LOC104781971 isoform X1
TrEMBLR0FXE51e-154R0FXE5_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010505080.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-123Trihelix family protein