PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g047740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 265aa    MW: 28633.8 Da    PI: 9.6663
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g047740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.71.9e-13156181126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G +C+FaHg
  Csa04g047740.1 156 WKTRICNKWEITGYCPFGTNCHFAHG 181
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.5E-1470107IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-672105IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-573100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.79873101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-17150185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10152186IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-8155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.216155183IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10156181IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MSHRRASGSD VVHVRTTNDL PPENKFPNSA SDSSVWATED DYNRVRAMPT HPDDAQSPSK  60
KTRASSSEIG KSFFKTKLCF KFRTGTCPYA ASSCHFAHSS EELRRPPPPP NRQETAATEA  120
SRNRESFAIS LGPRGYGGAA SDGGGNVAQT LKPPNWKTRI CNKWEITGYC PFGTNCHFAH  180
GASELHNFGG GLVEGEGKIG TSTTPATKQT GQANTVAHLV SPGVLSQRAS SAVMQKPNGV  240
RTQRKWKGPD KISRVYGDWI DDIE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g047740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010505048.10.0PREDICTED: zinc finger CCCH domain-containing protein 28-like
SwissprotQ5PP651e-129C3H28_ARATH; Zinc finger CCCH domain-containing protein 28
TrEMBLR0HDV01e-145R0HDV0_9BRAS; Uncharacterized protein
STRINGXP_010505048.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35430.11e-113C3H family protein