PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g046990.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YA
Protein Properties Length: 202aa    MW: 22505 Da    PI: 8.9809
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g046990.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.81.3e-3198154158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq+Rakle++++  +ks+kpy+heSRh hA+rRpRg+gGrF
  Csa04g046990.1  98 EEPVFVNAKQYHGILRRRQSRAKLEARNRA-IKSKKPYMHESRHLHAIRRPRGCGGRF 154
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-3596157IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.35397157IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.9E-2699154IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006169.8E-24100122IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860102122IPR018362CCAAT-binding factor, conserved site
PRINTSPR006169.8E-24131154IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTSSVHELSD KNDSHGKQEE RPDSQTRPPV PSGRSSESID ATSAYSEPVA HGLYPYPDPY  60
YRSVFAQQPY LPHPYPGVQL QLMGMQQPGV PLQCDAVEEP VFVNAKQYHG ILRRRQSRAK  120
LEARNRAIKS KKPYMHESRH LHAIRRPRGC GGRFLNAKKK NGEHKEEEEE EASSDENTSE  180
ASSSLRSEKL AIAASAPNGR S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-2097167171NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g046990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0724140.0AY072414.1 Arabidopsis thaliana putative CCAAT-binding transcription factor subunit (At2g34720) mRNA, complete cds.
GenBankAY1147110.0AY114711.1 Arabidopsis thaliana putative CCAAT-binding transcription factor subunit (At2g34720) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504943.11e-147PREDICTED: nuclear transcription factor Y subunit A-4
RefseqXP_010504944.11e-147PREDICTED: nuclear transcription factor Y subunit A-4
RefseqXP_010504946.11e-147PREDICTED: nuclear transcription factor Y subunit A-4
RefseqXP_019100436.11e-147PREDICTED: nuclear transcription factor Y subunit A-4
SwissprotQ8VY641e-131NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLA0A178VWS51e-129A0A178VWS5_ARATH; NF-YA4
STRINGXP_010504943.11e-146(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41682756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.11e-112nuclear factor Y, subunit A4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]