PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Publication

Basic Information? help Back to Top

TF ID

Csa04g046330.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 107aa MW: 11553.2 Da PI: 8.3428

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g046330.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	23.8	1e-07	84	104	2	22
G2-like 2 prlrWtpeLHerFveaveqLG 22 rlrWtpe He+Fv+ v +LG Csa04g046330.1 84 LRLRWTPEVHESFVKSVIKLG 104 69******************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-5	81	104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MENTCDFNYG HYQLTNSSRL DKGIGESEIE SSRLVKLVKI CEMLLASSNP VTRLSPCQSC 60 VAGAVPIDVV SSHPSPGSAA NHKLRLRWTP EVHESFVKSV IKLGKA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g046330.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026645	3e-53	AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBank	AY050889	3e-53	AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBank	AY084738	3e-53	AY084738.1 Arabidopsis thaliana clone 116381 mRNA, complete sequence.
GenBank	AY096674	3e-53	AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBank	CP002686	3e-53	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499814.1	4e-30	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010499823.1	4e-30	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010499830.1	4e-30	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_010499839.1	4e-30	PREDICTED: myb family transcription factor PHL6-like
Refseq	XP_019101525.1	4e-30	PREDICTED: myb family transcription factor PHL6-like
Swissprot	Q949U2	2e-26	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	D7L0M9	2e-27	D7L0M9_ARALL; Uncharacterized protein
STRING	XP_010499814.1	1e-29	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	8e-29	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]