PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g046160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 314aa    MW: 35052.2 Da    PI: 9.9085
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g046160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix452.9e-1426125186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrt.sessstcpy 81 
                     +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+ +qCk++++ l+k+yk +k++ ++ +    +s +p+
  Csa04g046160.1  26 CWSEEATFTLIQAWGNRFVELSRGNLRQKHWQEVANAVndrhfnsgrnvsaAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSDSNpGSYVSPWPF 120
                     7************************************************997777789********************99998862445789*** PP

        trihelix  82 fdqle 86 
                     f+ l+
  Csa04g046160.1 121 FSALD 125
                     *9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2424127No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MMDSVHDSFS PGSSRPSPST LSREDCWSEE ATFTLIQAWG NRFVELSRGN LRQKHWQEVA  60
NAVNDRHFNS GRNVSAAKSQ PYRTDVQCKN RIDTLKKKYK VEKARVSDSN PGSYVSPWPF  120
FSALDDLLRE SFPTSSTPDS TDNNPNLRLS LPMAIIPVPV APRSAIPRRP ANSPAIIPHV  180
GDDLLGFRGN LNAFAAAAAA AACPASEDDS EGSRSRSSGG RSGSNKKRER EIEKKQGYKE  240
VADAIERLGQ IYERVEERKR KEMVELEKQR MRFAKELECH RMQLFTEMQV RLHKLRRTSG  300
SKEPNSSASA GET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g046160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1370820.0AL137082.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100416.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLR0FPF30.0R0FPF3_9BRAS; Uncharacterized protein
STRINGXP_010504818.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-147sequence-specific DNA binding transcription factors