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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa04g044410.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
SBP |
Protein Properties |
Length: 351aa MW: 39001.5 Da PI: 8.8266 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa04g044410.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 129.1 | 1.6e-40 | 59 | 136 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
+CqvegC++dls+ak y++rhkvC +hsk+++v+vsgl+qrfCqqCsrfh+lsefD ekrsCrrrLa hnerrrk+q+
Csa04g044410.1 59 RCQVEGCKMDLSNAKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKRSCRRRLACHNERRRKPQP 136
6**************************************************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MELLMGGSGQ TESGGASSTE SSSLSGGLRF GQKIYFEDGS GSGSKNRVGA GHKSSTTARC 60 QVEGCKMDLS NAKAYYSRHK VCCIHSKSSK VIVSGLHQRF CQQCSRFHQL SEFDLEKRSC 120 RRRLACHNER RRKPQPTTLY TRIAASLYGN ANAAMIKSVL GDPTVWSTAR SVMRRSGPWQ 180 INPVKESHHQ HMNVFSQESS SFTITCPEMM NNNSTDSSCA LSLLSNSNSN PIQQQQQQLQ 240 TQTNIWRPSS GFDYMTVDRV TLAQPPPIPS HHQYLNQTLE FMTGEKNSSH YMSPALGPSQ 300 ISAPDEFQIS NGTTMDGFEL SLHQQVLRQY MAPENTRAYD SSPHHFNWSL *
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Functional Description ? help
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Source |
Description |
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Negatively regulated by microRNAs miR157. {ECO:0000305|PubMed:12202040}. |