PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g043810.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 257aa    MW: 28745.3 Da    PI: 5.5108
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g043810.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.53.6e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRrng++KKA+ELS+LCda+va+iifsstgk+y++ss
  Csa04g043810.1  9 KKIENVNSRQVTFSKRRNGLFKKAKELSILCDADVALIIFSSTGKIYDFSS 59
                    68***********************************************96 PP
2K-box53.51e-18941781599
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     e   ++ + +k e+e Lq    +l+G++L+ +s+ +L +Le+qL++sl++++++K++lll+qie+++ +ek++ een+ Lr+++e
  Csa04g043810.1  94 EAVLRNDDSMKGELERLQLATERLKGKELDGMSFPDLISLETQLNESLRSVKDQKTKLLLNQIERSRLQEKRALEENQILRRQVE 178
                     5555666899********999*************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
CDDcd002654.11E-43277No hitNo description
SuperFamilySSF554557.59E-32274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-29323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-293859IPR002100Transcription factor, MADS-box
PfamPF014864.7E-1591177IPR002487Transcription factor, K-box
PROSITE profilePS5129712.48393183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009910Biological Processnegative regulation of flower development
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRGKIEIKK IENVNSRQVT FSKRRNGLFK KAKELSILCD ADVALIIFSS TGKIYDFSST  60
CMEQILSRYG YTTASAEHKQ REQQLLLGAS HDNEAVLRND DSMKGELERL QLATERLKGK  120
ELDGMSFPDL ISLETQLNES LRSVKDQKTK LLLNQIERSR LQEKRALEEN QILRRQVELL  180
GRGSGPKVLS EIPQASSPED ADPEISSSDD DENDNEEHHS DTSLQLGLAS TGYCIKRKKP  240
KMEQVCDNSG SQVASD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-21187185MEF2 CHIMERA
6bz1_B8e-21187185MEF2 CHIMERA
6bz1_C8e-21187185MEF2 CHIMERA
6bz1_D8e-21187185MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation. {ECO:0000269|PubMed:17521410, ECO:0000269|PubMed:18034896, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g043810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3126630.0AF312663.1 Arabidopsis thaliana MADS-box protein AGL18 (AGL18) mRNA, complete cds.
GenBankAK2222200.0AK222220.1 Arabidopsis thaliana mRNA for MADS transcription factor-like protein, complete cds, clone: RAFL25-29-C20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504666.10.0PREDICTED: agamous-like MADS-box protein AGL18
SwissprotQ9M2K81e-152AGL18_ARATH; Agamous-like MADS-box protein AGL18
TrEMBLR0HL441e-150R0HL44_9BRAS; Uncharacterized protein
STRINGXP_010504666.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60612139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.11e-142AGAMOUS-like 18