![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa04g043230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 305aa MW: 32694.7 Da PI: 7.9866 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49 | 1.3e-15 | 231 | 274 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+k+ Csa04g043230.1 231 RRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENERLRKQ 274 79***************************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.9E-14 | 224 | 274 | No hit | No description |
SMART | SM00338 | 1.8E-13 | 227 | 291 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.45 | 229 | 274 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.41E-23 | 231 | 277 | No hit | No description |
SuperFamily | SSF57959 | 1.94E-11 | 231 | 274 | No hit | No description |
Pfam | PF00170 | 4.1E-13 | 231 | 274 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 234 | 249 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 305 aa Download sequence Send to blast |
MDSQRGIVEE AKSQSLNRQG SLYSLTLDEV QNHLGSSGKA LGSMNLDELL KSVCSVEANQ 60 PSSMALNGAA TAQEGLSRQG SLTLPRDLSK KTVDEVWKDI QQNKNGGNGH ERRDKQPTLG 120 EMTLEDLLLK AGVVTETIPG SNHDGPGVPV GGGGSAGSGA GLGQNITQVG PWVQYHQLPS 180 MPQPQTFMPY PVSDMQAMVS QSSLMGGLSD TQTPGRKRVA SGEVVEKTVE RRQKRMIKNR 240 ESAARSRARK QAYTHELEIK VSRLEEENER LRKQKILSVS ICGHSLSLDF CAGGGEDPAK 300 CTTA* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa04g043230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB017162 | 0.0 | AB017162.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 3 (AREB3), complete cds. | |||
GenBank | AY062448 | 0.0 | AY062448.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850; T8M16_180) mRNA, complete cds. | |||
GenBank | AY081670 | 0.0 | AY081670.1 Arabidopsis thaliana promoter-binding factor-like protein (At3g56850) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010504594.1 | 0.0 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
Swissprot | Q9LES3 | 1e-180 | AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | R0FMQ7 | 1e-180 | R0FMQ7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010504594.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1884 | 28 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56850.1 | 0.0 | ABA-responsive element binding protein 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|