PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g042070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 410aa    MW: 44968.3 Da    PI: 5.3378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g042070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding591.1e-185095147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+teEd  l ++v++lG ++W++Iar ++ gR++k+c++rw + 
   Csa04g042070.1 50 KGPWSTEEDAVLTKLVTKLGARNWSLIARGIP-GRSGKSCRLRWCNQ 95
                     79******************************.***********985 PP
2Myb_DNA-binding49.21.3e-15102146147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd  ++ a++ +G++ W+ Ia+++  gRt++ +k++w++ 
   Csa04g042070.1 102 RKPFSDEEDRMIISAHAIHGNK-WAVIAKMLT-GRTDNAIKNHWNST 146
                      789*******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.41645100IPR017930Myb domain
SuperFamilySSF466896.25E-3047143IPR009057Homeodomain-like
SMARTSM007172.9E-144998IPR001005SANT/Myb domain
PfamPF002493.6E-165095IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-2651103IPR009057Homeodomain-like
CDDcd001671.82E-135294No hitNo description
SMARTSM007176.6E-16101149IPR001005SANT/Myb domain
PROSITE profilePS5129420.456101151IPR017930Myb domain
PfamPF002493.8E-14102146IPR001005SANT/Myb domain
CDDcd001678.26E-12104147No hitNo description
Gene3DG3DSA:1.10.10.602.9E-23104150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDRSEPLPLP FTDSDEGMSA AIEAELAELA AGDSSGGCGG GGGRVKSKVK GPWSTEEDAV  60
LTKLVTKLGA RNWSLIARGI PGRSGKSCRL RWCNQLDPSL KRKPFSDEED RMIISAHAIH  120
GNKWAVIAKM LTGRTDNAIK NHWNSTLRRK YADLWNNDGQ WMANSVTTAY VKNENLDEVS  180
NPSSKQQFLQ EDINSPPKPP QVSDVVMEDA ANEPHQEQAS PPVENNVQAP PVESNVQAPP  240
PVESNVPIES SNVFRPVARV GAFSVYNPTS QRNGYRDHNI VPCEGLLIQA AKPDSLAGKF  300
LQTLYDEPHV PSKCGRGCST TNPAETKYSR NSVLGPEFVD YEEPCAVFNQ ELISIATDLN  360
NIAWIKSGLD NAVVREAEQS LKIDNCNYND PRIKFTGMMP RQDFFCARS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-37491506107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g042070.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2627341e-176AF262734.2 Arabidopsis thaliana putative transcription factor MYB109 (MYB109) mRNA, complete cds.
GenBankAY1363251e-176AY136325.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
GenBankAY5196001e-176AY519600.1 Arabidopsis thaliana MYB transcription factor (At3g55730) mRNA, complete cds.
GenBankBT0000921e-176BT000092.1 Arabidopsis thaliana MYB transcription factor-like protein (At3g55730) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504436.10.0PREDICTED: myb-related protein B-like
SwissprotO041921e-105MYB25_ARATH; Transcription factor MYB25
TrEMBLR0HGB70.0R0HGB7_9BRAS; Uncharacterized protein
STRINGXP_010504436.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.10.0myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]