PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GATA

Protein Properties

Length: 327aa MW: 36011 Da PI: 6.5103

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g040960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	56.4	4e-18	235	268	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C +tkTp+WR gp g+ktLCnaCG++y++ + Csa04g040960.1 235 CMHCEVTKTPQWRLGPMGPKTLCNACGVRYKSGR 268 99*****************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	5.4E-94	1	325	IPR016679	Transcription factor, GATA, plant
PROSITE profile	PS50114	11.53	229	265	IPR000679	Zinc finger, GATA-type
SMART	SM00401	9.3E-16	229	279	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.4E-14	233	266	IPR013088	Zinc finger, NHR/GATA-type
SuperFamily	SSF57716	1.33E-14	233	292	No hit	No description
CDD	cd00202	7.35E-15	234	281	No hit	No description
PROSITE pattern	PS00344	0	235	260	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	4.2E-16	235	268	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009845	Biological Process	seed germination
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MIGQSFPEDL DCGNFFDNMD DLMDFPGGDI DVGFGIGDSD SFPTIWTSHQ DTWPAASDPL 60 FSSNTTTNSD SSPELYVPFE DIVKVDRPPS FVEESLVEKK EDSFSTNTDS SSSHSQFRSS 120 SPVSVLESSS SSSQTTNTTS LVLPGKHGRP RTKRPRPPVQ DKDRVKDNNN VCGADSRLII 180 RIPKQFLSDH NKMINKKKKK KAKVSSSSSS SGIDLEVNGN NVDSYSSELH PVRKCMHCEV 240 TKTPQWRLGP MGPKTLCNAC GVRYKSGRLF PEYRPAASPT FTPALHSNSH KKVAEMRSKR 300 CSDGSYITEE NDLQELIPNN AYIGVD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	156	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g040960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF412107	0.0	AF412107.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.
GenBank	AK317503	0.0	AK317503.1 Arabidopsis thaliana AT3G54810 mRNA, complete cds, clone: RAFL23-14-K23.
GenBank	AY078029	0.0	AY078029.1 Arabidopsis thaliana AT3g54810/F28P10_210 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504307.1	0.0	PREDICTED: GATA transcription factor 8
Refseq	XP_010504308.1	0.0	PREDICTED: GATA transcription factor 8
Swissprot	Q9SV30	0.0	GATA8_ARATH; GATA transcription factor 8
TrEMBL	D7LUX8	0.0	D7LUX8_ARALL; GATA transcription factor
STRING	XP_010504307.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4975	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54810.2	1e-136	GATA family protein

Publications ? help Back to Top
Choi D, et al. iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis. Mol Plant, 2014. 7(5): p. 792-813 [PMID:24380880] Li T,Wu XY,Li H,Song JH,Liu JY A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network. Mol Plant, 2016. 9(5): p. 650-661 [PMID:26961720]