PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g038070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 1860aa MW: 203014 Da PI: 6.9945 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.3 | 6.5e-12 | 879 | 920 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT eE e++++ +++G++ +k+Ia+++ +t +c+++++k Csa04g038070.1 879 PWTSEEKEIFLKMLALHGKD-FKKIASYLK-QKTTADCIDYYYK 920 8*****************99.********9.9**********98 PP | |||||||
2 | Myb_DNA-binding | 26.9 | 1.1e-08 | 1095 | 1136 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E +++++ ++G++ +++I+r++g R++ qc+ ++ k+ Csa04g038070.1 1095 WTDDERSAFIQGFSLFGKN-FASISRYVG-SRSPDQCRVFFSKV 1136 *****************99.*********.********998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.4E-15 | 862 | 923 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-7 | 871 | 922 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.717 | 875 | 926 | IPR017884 | SANT domain |
SMART | SM00717 | 1.3E-10 | 876 | 924 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-10 | 878 | 920 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.47E-9 | 879 | 921 | No hit | No description |
PROSITE profile | PS51293 | 12.5 | 1090 | 1141 | IPR017884 | SANT domain |
SMART | SM00717 | 6.0E-8 | 1091 | 1139 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.62E-9 | 1094 | 1141 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 1094 | 1135 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-7 | 1095 | 1135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-6 | 1095 | 1136 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1860 aa Download sequence Send to blast |
MPQDHASWDR KELLRQRKHD RPEPSSFDSP FRWRDSPSST PSSHHVPREF SRWGSGDFRR 60 PSSSSSSSCH GKQGGRHQFA EESSHGYTSS RSSARIFDND YYRPSASRGD WRYTRNCRDD 120 RVSVSQKEWK CNTWEMSNGS SRSFERPFGI RNGRRSVDER PLHASDTHTT AVNSFDPTNS 180 AHHPDTEVYT PVRSLKFKSE QKFSDQRLSL PSDPHSDCVS LFERPSSENN YGNKVCSPAK 240 QCNDLIYGRR IANDNSLDPP ILNAELEGTW EQLHLKDPQE DNRLHGISDL DGARKCAKES 300 ALGAIGKLPL WNSSGSFASQ SSGFSHSSSL KSLGAVDSSD RKTEALPKTV TVTQSSSGDA 360 TACATTTHLS EEMSSRKKQR LGWGEGLAKY EKKRVDVNTN EDGTTLLENG SEELHSLNKN 420 IADKSPTAAT VPDYGSPTTP SSVACSSSPG FADKSSAKAA IAACDVSNIC RSPSPVSSFH 480 LEQFPINIEE LDNISMERFG CLLNELLCTD DPGTGDSSSV QLTSMNRLLS WKSEILKAVE 540 MTESEIDLLE NKHRALKLER GRHCHVVGPS SHFCEGDANV PKEQEASCIL GPKVAAPSVA 600 ETLVRSLVHQ SGLAKVPVDV FEDNPGEVKS LSQSFATVES NEDLLPMPSM KAAASSKEIN 660 TPAFVNQEII ELSAADDSMA SKEDLLCATL YSSNKKYACE SSGVFNDLLP RNFCSFDGSR 720 FPSICHTQFD SHVKEKIADR VELLRAREKI LLLQFKAFQL SWKKDLHQLA STKYQSKSSK 780 KTELYPNAKN GGYLKLPQPV RLRFSSSAPR KDSVIPTTEL VSYMEKLLPG THLKPFRDIL 840 RMPAMILDEK ERVMSRFISS NGLVEDPCDV EKERTMINPW TSEEKEIFLK MLALHGKDFK 900 KIASYLKQKT TADCIDYYYK NHKSDCFGKI KKQRAYGKEG KHTYMLAPRK KWKRDMGTAS 960 LDLLGSVSVI AAANAGKVAP TRPIASKRIT LRGCSSSNSL QHDGNNSEGC SYSFDFPRKR 1020 TVGADVLAVG PLSSEQINSC LRTSVSSRER FMDHLKFNPV VKKPRISHTL HNENSNEEDD 1080 SCSEESCGET GPIHWTDDER SAFIQGFSLF GKNFASISRY VGSRSPDQCR VFFSKVRKCL 1140 GLEFIQSGSG NVSTSVSVDN GNEGGGSDLE DPCPMESNSG ICNNGVCAKM DMNSPTSPFN 1200 MNQDGANHSG SANVKADLSR SEQENGLTYM QDGSNPVNNA YINGGLPGLI SESCRDLVDI 1260 NTVESQSQAA GKSKSNDLLS MEIDEGVLTS VAVSSEPLYC GLSVLSNVIV ETPAESSRKG 1320 SGDQGSAIPK LSSKNQDGVM QAANRTRNSG LEPESAPSGF KYPDCLHHVP IEVCTENPIG 1380 VSVPRGNPNC HTEGKSGHSL VGQAVETHDL GWQSSKDNVE LDGQLQVIGH VNPEQNGHLN 1440 ANYAESCQIP KRSAIQDPSR ISRSKSDLIV KTQRTGEGFS LNKCTSSAPN LVSSEPLYCG 1500 LSVLSNVIVE TPAESSRKGS GDQGSAIPKL SSKNQDGVMQ AANRTRNSGL EPESAPSGFK 1560 YPDCLHHVPI EVCTENPIGV SVPRGNPNCH TEGKSGHSLV GQAVETHDLG WQSSKDNVEL 1620 DGQLQVIGHV NPEQNGHLNA NYAESCQIPK RSAIQDPSRI SRSKSDLIVK TQRTGEGFSL 1680 NKCTSSAPNL LAVSHKEGRS GHSRSHSFSL SDTERLDKNG DVKLFGTVLT ADENGIKQKH 1740 NPCGSVRSSS TLSRDHDIRL HYINQQHLQN VPITSYGFWD GNRIQTGLTS LPESAKLLAS 1800 CPEAFSLHLK QQVGKEIRLD VNGGGILSFG KHNEDRAEAS SAKDGCNIGG LNGVAEAAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4a69_C | 7e-16 | 837 | 927 | 4 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
4a69_D | 7e-16 | 837 | 927 | 4 | 93 | NUCLEAR RECEPTOR COREPRESSOR 2 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g038070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010503962.1 | 0.0 | PREDICTED: uncharacterized protein LOC104781070 isoform X1 | ||||
Refseq | XP_019100288.1 | 0.0 | PREDICTED: uncharacterized protein LOC104781070 isoform X2 | ||||
Refseq | XP_019100289.1 | 0.0 | PREDICTED: uncharacterized protein LOC104781070 isoform X3 | ||||
TrEMBL | D7LU40 | 0.0 | D7LU40_ARALL; Myb family transcription factor | ||||
STRING | XP_010503962.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5260 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 0.0 | MYB family protein |