PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g036910.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 1282aa    MW: 140809 Da    PI: 6.8276
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g036910.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.5e-0612601281426
                      ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    4 elCrffartGtCkyGdrCkFaHg 26  
                      ++C+ f+++G Ck G++C+F H+
  Csa04g036910.1 1260 KICK-FYESGNCKKGASCSFWHP 1281
                      6899.8999***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.88E-7108165IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.9E-7109168IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.591113179IPR019787Zinc finger, PHD-finger
SMARTSM002499.1E-7115161IPR001965Zinc finger, PHD-type
CDDcd155683.75E-19115160No hitNo description
PROSITE patternPS013590116176IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475921.42E-20319397IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.102.0E-23319406IPR003121SWIB/MDM2 domain
PfamPF022019.2E-13329397IPR003121SWIB/MDM2 domain
PROSITE profilePS5136019.281446579IPR004343Plus-3 domain
SMARTSM007194.1E-46446556IPR004343Plus-3 domain
SuperFamilySSF1590427.72E-26447575IPR004343Plus-3 domain
PfamPF031261.2E-17451554IPR004343Plus-3 domain
SuperFamilySSF552772.88E-16719775IPR003169GYF domain
CDDcd000725.70E-20722779No hitNo description
PROSITE profilePS5082915.702722776IPR003169GYF domain
SMARTSM004449.7E-16723778IPR003169GYF domain
Gene3DG3DSA:3.30.1490.404.4E-17724776IPR003169GYF domain
PfamPF022138.1E-12724768IPR003169GYF domain
SuperFamilySSF902297.72E-612561280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.15512561281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-412601280IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1282 aa     Download sequence    Send to blast
MKNQQKQLQR GVPELASLAG REESSVRGID LMRVDQCDEI GAANQVSTLS VSASTVSGTV  60
AVPVSIEQEV KVIDEAAPVK RKRGRPPRSQ ANTPLHNRPP PPPPPLRKDD KEEDVCFICF  120
DGGDLVLCDR RNCPKAYHPA CIKRDEAFFR TTAKWNCGWH ICGTCQKASS YMCYTCTFSV  180
CKRCIKDADY VIVRGNMGLC GTCIKPVMLI ENIAQGDNEA VKVDFDDKLS WEYLFKIYWL  240
CLKEDLSLTV DELTRANNPW KEVSNTAPKV ESRNDPTNNR VLDVAVNGTK RRRTSDSPTL  300
PSKVDGKKPN NILKKAPGDT CWATRELLEF VSFMKNGDTS VLSQFDVQGL VLDYIKQKDL  360
RDPLQKSQVV CDPMLGKLFG KPRVGHFEML KLLESHVLIQ EKQKDDKTTN GESTHTVPSQ  420
IEDRRRKMRR KTDGRVQNEN LDAHAAIDVH NINLIYLRRK YLESLLDDIN KVHEKVVGTI  480
LRIKVSGSDQ KLDIHRLVQV VGTSKATASY QLGPKTTDVM LEILNLDKRE VISIDQLSDQ  540
NVTEDECKRL RQSIKNGLNK RLTVGDILKT AATLQAMRIN ESLEAETLKL NHLRDRASEK  600
GHRKELRECV EKLELLKSPE ERQRRLQEVP EVHTDPSMDP SHASSEDAGL GTRNQDNHIT  660
AQSKGPLKKG AILNNMGNNA QKKYDAPILR SRNAVHSEKD DCSKVHNNSS NIQETGKDDE  720
ESEIWHYRDP TGKTQGPFSM VQLRRWKSSG HFPPYLRIWK AHENQDESVL LTDALAGRFD  780
KASTLPSSSS LPQEPKPSPH DSGMDVNCLQ KNHTPVNTSA TSSPYTVSAH FDDPKEKQVV  840
ALVACSGEDG NSVCPQPQVS CPASMSVVPG HVVTPDVREG SDLSNVVRAD GNHSTTNTVE  900
DGSNGGSVYI NGSVHAPNLN QESHFPDFPS PTPKSSPEDL EAQAAETIQS LSSCVLVKGP  960
SGVTWSTTTT STTDSATTTS SVVVTGGLLP QVTQQNAVVL AAPSVKPIDL VADHATTTQT  1020
SDNTQVAQSS GWPAIVADPD ECDESVSDLL AEVEAMEQNG LPSSPTSTFH CDDDDDLTKG  1080
PEKDFFNPVA RMSLAPETCR MDVSQASILE NVSAGKSSMG TEEKVNTPFS HCGTAGPELL  1140
LFAPPAPAPA SITHDLTLTT TALRLGSETT VEAGPVVERL LKSGSEPSPR ALSYHDSARG  1200
NTERSPRGSQ QKRSSGHSRD RQWLNNGHNS HNNRQWPYSN SHGYAHGSGS YAAHPPKGLK  1260
ICKFYESGNC KKGASCSFWH P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A3e-131131821581Histone-lysine N-methyltransferase NSD3
4gnd_C3e-131131821581Histone-lysine N-methyltransferase NSD3
4gne_A3e-131131821581Histone-lysine N-methyltransferase NSD3
4gnf_A3e-131131821581Histone-lysine N-methyltransferase NSD3
4gng_A3e-131131821581Histone-lysine N-methyltransferase NSD3
4gng_D3e-131131821581Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g036910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503797.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
SwissprotQ9SD340.0C3H44_ARATH; Zinc finger CCCH domain-containing protein 44
TrEMBLR0HHW80.0R0HHW8_9BRAS; Uncharacterized protein
STRINGXP_010503797.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77872130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding