PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GATA

Protein Properties

Length: 316aa MW: 34784.6 Da PI: 5.7554

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g036840.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	58.3	1.1e-18	221	255	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l Csa04g036840.1 221 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 255 *******************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF016992	4.3E-96	6	312	IPR016679	Transcription factor, GATA, plant
SuperFamily	SSF57716	5.7E-14	213	277	No hit	No description
PROSITE profile	PS50114	11.899	215	251	IPR000679	Zinc finger, GATA-type
SMART	SM00401	1.3E-16	215	269	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	9.4E-15	219	253	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.40E-14	220	268	No hit	No description
Pfam	PF00320	1.3E-16	221	255	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	221	246	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MESVVELAAL KNSSKTLTNG GAQNGDDFSV DDLLNFSNED DEDALVEDET DLKKPQRKRG 60 LSSDETTLLM SNDFSAVNFP TTELAVPMDD LAELEWLSNF VDDSFTPYSS LAPTKKPVWL 120 TGNRRRSVPP VKEETCFKAP PPPVQIRPKR ARTGVTYWSH GSPSSSSSSA TSSSSGPPSS 180 PLWLSGFDLD LLDEPRVKKQ KKTKKLADQT QTQTQTQTRR CSHCGVQKTP QWRAGPMGAK 240 TLCNACGVRF KSGRLLPEYR PACSPTFSSE LHSNHHRKVI EMRRKKETSQ EEGDDDDDDD 300 GTTGLNQTVQ AVPSF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g036840.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL132980	3e-74	AL132980.3 Arabidopsis thaliana DNA chromosome 3, BAC clone F24M12.
GenBank	CP002686	3e-74	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010503788.1	0.0	PREDICTED: GATA transcription factor 6-like
Refseq	XP_010503789.1	0.0	PREDICTED: GATA transcription factor 6-like
Swissprot	Q9SD38	1e-121	GATA6_ARATH; GATA transcription factor 6
TrEMBL	D7LTM8	1e-123	D7LTM8_ARALL; GATA transcription factor
STRING	XP_010503788.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3698	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51080.1	1e-114	GATA transcription factor 6

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]