PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g036390.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BES1

Protein Properties

Length: 281aa MW: 30562.1 Da PI: 9.6312

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g036390.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	203.9	4.9e-63	13	153	1	145
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 +++gr+ptwkErEnnkrRERrRRaiaaki++GLR+qGnyklpk++DnneVlkA c eAGw+v++DGttyrkgs+p+ +++ p+ss+q Csa04g036390.1 13 AAAGRMPTWKERENNKRRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKAVCLEAGWIVHEDGTTYRKGSRPM---------ETTPPCSSIQ 98 589***********************************************************************.........8999** PP DUF822 96 sslkssalaspvesysaspksssfpspssldsislasa.....asllpvlsvlsl 145 +s++ssa++sp++sy+asp+sss+psp+++d+i+++ + + l+p+l++l++ Csa04g036390.1 99 LSPQSSAFQSPIPSYQASPSSSSYPSPTRFDHIPNRFDpnqssTYLIPYLQNLAS 153 ******************************98764456666888888888865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.1E-60	15	151	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MTASGGGGGG STAAAGRMPT WKERENNKRR ERRRRAIAAK IFTGLRSQGN YKLPKHCDNN 60 EVLKAVCLEA GWIVHEDGTT YRKGSRPMET TPPCSSIQLS PQSSAFQSPI PSYQASPSSS 120 SYPSPTRFDH IPNRFDPNQS STYLIPYLQN LASSGNLVPL RISNSAPVTP PLSSPRGSNP 180 RLPRWQSSNF PVSAPSSPTR RLHHYTSIPE CDESDVSTVD SCRWGNFQPV SVSQTCPPSP 240 TFNLVGDVSV KPWEGEKIHD VGIDDLELTL GNNTKGRGKN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	8e-25	17	88	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	8e-25	17	88	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	8e-25	17	88	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	8e-25	17	88	372	443	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g036390.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT002452	1e-137	BT002452.1 Arabidopsis thaliana putative protein (At3g50750) mRNA, complete cds.
GenBank	BT006310	1e-137	BT006310.1 Arabidopsis thaliana At3g50750 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010503740.1	0.0	PREDICTED: BES1/BZR1 homolog protein 1-like
Swissprot	Q9S7F3	1e-154	BEH1_ARATH; BES1/BZR1 homolog protein 1
TrEMBL	R0FPV1	1e-159	R0FPV1_9BRAS; Uncharacterized protein
STRING	XP_010503740.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14467	17	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50750.1	1e-139	BES1/BZR1 homolog 1