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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g036330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 424aa MW: 45079 Da PI: 9.7436 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.5 | 1.2e-05 | 63 | 85 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Csa04g036330.1 63 FVCEICNKGFQRDQNLQLHRRGH 85 89*******************88 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0015 | 139 | 161 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Csa04g036330.1 139 WKCDKCSKIYAVQSDWKAHSKIC 161 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.75E-7 | 62 | 85 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.3E-5 | 62 | 85 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 63 | 85 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 6.5E-5 | 63 | 85 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 63 | 85 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 65 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 280 | 104 | 134 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.75E-7 | 134 | 159 | No hit | No description |
SMART | SM00355 | 180 | 139 | 159 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MPVDLDNSST VSGEASVSIS STGNQNPLVN STGKKKRNLP GMPDPESEVI ALSPKTLLAT 60 NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSSKEVR KKVYVCPEVS CVHHEPSRAL 120 GDLTGIKKHF CRKHGEKKWK CDKCSKIYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF 180 ITHRAFCDAL AEESARSNNH SQSKKQSPEI STRTKPVPDP IPAPVDTESA KIKSSSTLKQ 240 SDSPKTPPDI VQEAPKPTGL NVTRNCVFAG LFESSTASPS HGSSFLGLNR FQAQPAMSAT 300 ALLQKAAQMG AASSGGSLLH GLGIVSSSSS SMDAIVPHGL GLGLPCGGES SSGLKELMMG 360 NSSVFGQKQT TLDFLGLGRA VGNGNEPSNG LSALVGGSSG IDMATTFGSG EFSSGKDISR 420 RKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 3e-34 | 135 | 200 | 3 | 72 | Zinc finger protein JACKDAW |
5b3h_F | 3e-34 | 135 | 200 | 3 | 72 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 101 | KLRQKSSKEVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g036330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK226933 | 0.0 | AK226933.1 Arabidopsis thaliana mRNA for zinc finger protein, complete cds, clone: RAFL09-26-M08. | |||
GenBank | BT014947 | 0.0 | BT014947.1 Arabidopsis thaliana At3g50700 gene, complete cds. | |||
GenBank | BT015836 | 0.0 | BT015836.1 Arabidopsis thaliana At3g50700 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010503737.1 | 0.0 | PREDICTED: protein indeterminate-domain 2-like isoform X2 | ||||
Swissprot | Q9SCQ6 | 0.0 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | R0HJI7 | 0.0 | R0HJI7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010503736.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 0.0 | indeterminate(ID)-domain 2 |
Publications ? help Back to Top | |||
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