PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g036150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 21588.6 Da PI: 8.2167 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 116.2 | 2.1e-36 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+kdCv+apyfp ++++++++vhk+FGas+v +l++++p+++r+ ams+l++eA+ r dP++G+ +++ lq ql+ l++++a Csa04g036150.1 10 PCAACKYLRRKCTKDCVFAPYFPTNKQESYEMVHKVFGASHVASLINEIPPSHRDFAMSTLAWEAQLRHIDPIHGVNSILDPLQYQLKDLQNQIA 104 7********************************************************************************************** PP DUF260 96 llkee 100 +k+e Csa04g036150.1 105 IAKNE 109 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.859 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-34 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MDKGNTITPP CAACKYLRRK CTKDCVFAPY FPTNKQESYE MVHKVFGASH VASLINEIPP 60 SHRDFAMSTL AWEAQLRHID PIHGVNSILD PLQYQLKDLQ NQIAIAKNEL SSSFGMVPKF 120 VPPPPITYQQ RIHPNPMIPD TTNNDGCLTA QQLRDEAKRF ASTQPAQFQQ TQETQTQYNE 180 SVMIVRDKKI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-32 | 10 | 122 | 11 | 127 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-32 | 10 | 122 | 11 | 127 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g036150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010507371.2 | 1e-142 | PREDICTED: LOB domain-containing protein 28-like | ||||
Swissprot | Q9SCS4 | 9e-69 | LBD28_ARATH; LOB domain-containing protein 28 | ||||
TrEMBL | R0FSZ0 | 6e-87 | R0FSZ0_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010507371.1 | 1e-142 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50510.1 | 2e-65 | LOB domain-containing protein 28 |