PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g029370.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 592aa    MW: 67094 Da    PI: 5.1247
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g029370.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS399.63.3e-1222175871374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++lL++cA+av+s d+++a + L++++e++s +gd++qRl  +++eAL+ar+++   +++  ++++ + ++++++ l+a+k f++++P+l++++
  Csa04g029370.1 217 MRDLLMQCAQAVASFDQSRAAEKLKEIREHSSIRGDATQRLGYHLAEALEARITG---TMATPISATYS-RTSMVDILKAYKGFVQACPTLRMCY 307
                     5799***************************************************...33333333333.4569********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +taN++I+e +++++++HiiDf+i +G+Q p+L+qaL++R++gpp lR+Tg++ p+sg   +e+leetg+rL++f+++++vpfe+++ +ak++ed
  Csa04g029370.1 308 FTANRTIYELASKATTLHIIDFGILYGFQLPCLIQALSNREGGPPLLRVTGIELPQSGfrPSERLEETGRRLKRFCDKFKVPFEYSF-IAKNWED 401
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l+eL +++gE+++Vn++l+l++++de++sl+s+rd+vLkl+++++P+++v++e +  +ns+ Fl+rf eal ++salfd++ea+lp+e++ r+
  Csa04g029370.1 402 ITLDELVINSGETTVVNCILRLQYTPDETMSLNSPRDTVLKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSALFDMYEATLPEEDDCRT 496
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vErel+ r++++v+aceg+er++r et+++W+ r+ +aGFkp++l++++ k ak ++++ + + + ++++++++++gWk+r L++vS+W+
  Csa04g029370.1 497 LVERELIVRDAMSVIACEGSERFARPETYKQWQVRILRAGFKPAKLNKEIIKHAKEIVKQRYHKDFVIDNDNHWMLQGWKGRVLYAVSCWK 587
                     **************************************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.222191567IPR005202Transcription factor GRAS
PfamPF035141.1E-119217587IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MDSVLQVTVD GFKFENGSGS CCKPMNNLDE SCFTCFDESE SQSDSSSPTE SKVCSDYLPV  60
FKYINDMLME EDLEDQPCML VDSLALQAAE KSFYEVLQDQ SPPTSDQISN DLEDGSLGNF  120
SSITSLHQPT SDIIGSPEVV SEESTRRYHH RDDDLEGGRK SKLPAISTMD ELAEKYEEVL  180
LICQKNNHGE ASPNKTKPAK GSSNRSKQQK SEQPVDMRDL LMQCAQAVAS FDQSRAAEKL  240
KEIREHSSIR GDATQRLGYH LAEALEARIT GTMATPISAT YSRTSMVDIL KAYKGFVQAC  300
PTLRMCYFTA NRTIYELASK ATTLHIIDFG ILYGFQLPCL IQALSNREGG PPLLRVTGIE  360
LPQSGFRPSE RLEETGRRLK RFCDKFKVPF EYSFIAKNWE DITLDELVIN SGETTVVNCI  420
LRLQYTPDET MSLNSPRDTV LKLFRDINPD LFVFAEINGT YNSPFFLTRF REALFHCSAL  480
FDMYEATLPE EDDCRTLVER ELIVRDAMSV IACEGSERFA RPETYKQWQV RILRAGFKPA  540
KLNKEIIKHA KEIVKQRYHK DFVIDNDNHW MLQGWKGRVL YAVSCWKPAK K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-442075889380Protein SCARECROW
5b3h_A2e-442075888379Protein SCARECROW
5b3h_D2e-442075888379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g029370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2264190.0AK226419.1 Arabidopsis thaliana mRNA for scarecrow-like protein, complete cds, clone: RAFL06-09-N12.
GenBankAL1333140.0AL133314.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F12A12.
GenBankAY0874180.0AY087418.1 Arabidopsis thaliana clone 35201 mRNA, complete sequence.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503272.10.0PREDICTED: scarecrow-like protein 30 isoform X2
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLD7LN250.0D7LN25_ARALL; Scarecrow transcription factor family protein
STRINGXP_010503271.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]