PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g028950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 176aa    MW: 20079.3 Da    PI: 9.8584
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g028950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind39.81.2e-121398295
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95
                    F  ++y++++d++++++isw ++ nsf+++   +f +k++p+  +   nf+SFv +L   g k+vk + +         eF +++F  ++ +l +
  Csa04g028950.1 13 FYVRVYQVVDDPSTDSIISWGSK-NSFIIWSVGQFCRKIMPTCVEIGvNFSSFVGKLRSHGVKRVKGPGQ--------LEFGDEYFVVDQPQLFK 98
                    8899*****************99.9*****************999755*****************99986........58888888777776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-159100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-129103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.2E-1510100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.7E-51336IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.8E-111399IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-56476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVHNCFPRGL SSFYVRVYQV VDDPSTDSII SWGSKNSFII WSVGQFCRKI MPTCVEIGVN  60
FSSFVGKLRS HGVKRVKGPG QLEFGDEYFV VDQPQLFKLM MVEALRTKRN AKKTKAKAKE  120
DRVQLATLIY RMYLWIIEIN SSSEVPLNFF PFSRKNLFLE ILHTENITGL SLDGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g028950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431177.11e-64PREDICTED: heat stress transcription factor A-6a-like
TrEMBLR0GJE46e-46R0GJE4_9BRAS; Uncharacterized protein
STRINGXP_010507231.11e-117(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.17e-31Winged helix-turn-helix transcription repressor DNA-binding