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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa04g028830.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
MYB |
| Protein Properties |
Length: 283aa MW: 32910.1 Da PI: 10.1061 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa04g028830.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.4 | 7e-18 | 34 | 81 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT++Ed llv+ v+++G ++W+ Ia+ g++Rt+k+c++rw +yl
Csa04g028830.1 34 KGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 81
79********************************************97 PP
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| 2 | Myb_DNA-binding | 56 | 9.4e-18 | 87 | 132 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg++T++E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
Csa04g028830.1 87 RGKMTPQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 132
89********************.*********.************986 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MVNQAEKELF TNKRKIKERK RRREMKMMQE ENRKGPWTEQ EDILLVNFVH LFGDRRWDFI 60
AKVSGLNRTG KSCRLRWVNY LHPGLKRGKM TPQEERLVLE LHAKWGNRWS KIARKLPGRT 120
DNEIKNYWRT HMRKKAQEKK RPASPTSSFS NCSSSSMTTT TTNTQETSCH SRKSSGKVSF 180
YDTGGSRSTG DMMNQETEDV YSMDDIWREI DHSAVNIIKP VKDIYSEQSH CLSYPTLASP 240
TWESSLDSIW NMDADQSKMS SSFANDQFPF CFQHSRSPWS SG*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 13 | 23 | RKIKERKRRRE |
| 2 | 18 | 22 | RKRRR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor. {ECO:0000305}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF272733 | 0.0 | AF272733.1 Arabidopsis thaliana putative transcription factor (MYB48) mRNA, complete cds. |
| GenBank | AY519594 | 0.0 | AY519594.1 Arabidopsis thaliana MYB transcription factor (At3g46130) mRNA, complete cds. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Nishida S,Kakei Y,Shimada Y,Fujiwara T
Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
Plant J., 2017. 91(4): p. 741-753
[PMID:28586097] - Imran QM, et al.
Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
Sci Rep, 2018. 8(1): p. 771
[PMID:29335449]
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