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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa04g026300.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
Dof |
Protein Properties |
Length: 244aa MW: 26472.3 Da PI: 9.331 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa04g026300.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 120.2 | 7.6e-38 | 36 | 96 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
+e++l+cprCdstntkfCyynnyslsqPryfCk+CrryWtkGG lrn+P+Gg+ rk+k+s+
Csa04g026300.1 36 PEQSLRCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGILRNIPIGGAYRKHKRST 96
67899****************************************************9986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MDYSSMHQNV VGVSSCSSQD YQNQKKPSQA TRPAPPEQSL RCPRCDSTNT KFCYYNNYSL 60 SQPRYFCKSC RRYWTKGGIL RNIPIGGAYR KHKRSTSATK SLRTTPEPTT AHDGRTFSTA 120 SFGGYNNNIN NEQMDLGLAF ALLNKQPLGV SSHLGFGSSQ SPMGMDGVFG TTSHQMQNAG 180 YAFGNGGGGL EQMATSDPNK VLWGFPWQMN MGGGGGSGHV EQNDSGREVW SSTVNYINTG 240 ALL*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that negatively affects seed germination and opposes TCP14 function in the regulation of a specific set of abscisic acid-related genes (PubMed:22155632). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:30626969}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By cytokinin in procambium. {ECO:0000269|PubMed:30626969}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ243033 | 0.0 | AJ243033.1 Arabidopsis thaliana mRNA for dof zinc finger protein (dof6 gene). |
Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] - de Lucas M, et al.
Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. Plant Cell, 2016. 28(10): p. 2616-2631 [PMID:27650334] - Ravindran P,Verma V,Stamm P,Kumar PP
A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor. Mol Plant, 2017. 10(10): p. 1307-1320 [PMID:28917589] - Miyashima S, et al.
Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]
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