![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa04g026120.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
C2H2 |
Protein Properties |
Length: 452aa MW: 50335.1 Da PI: 9.3884 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa04g026120.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Cas&pid=Csa04g026120.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 19.8 | 2.1e-06 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C++C+k F+r nL+ H r H
Csa04g026120.1 69 FICEICNKGFKRDQNLQLHRRGH 91
89*******************88 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 452 aa
Download sequence Send
to blast |
MMMPDDHHHQ LSFPSYVLHQ EHITPNPNPN PNPSSSNSAK RKRNLPGNPD PDAEVIALSP 60 NSLMATNRFI CEICNKGFKR DQNLQLHRRG HNLPWKLKQR TNKDQIKKKV YICPEKTCVH 120 HDPGRALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVMSD WKAHSKICGT REYRCDCGTL 180 FSRKDSFITH RAFCDALAEE SARFVSVPPA AASATPAYLH NAPDAEVNLG NINQNHQHGH 240 TTSSQLDQPG FNNQRQTFLG QTFTNQLPIQ PNVYASPSTR SASDSLQNLW HLQGQSSHQW 300 LLNENNNNNI LQRGISKNEE EHEIKKVVTS GSLFSSEALN NANDYSQNGG QIASMSATAL 360 LQKAAQMGSK RSSSSLNNSK AFGLMSNTSI FNNKQTENMK TTEVDEGGFT RDFLGVGSQH 420 STWPLLMVNR NLLDSSPPAT TDGTPTPDRN Q*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF428302 | 0.0 | AF428302.1 Arabidopsis thaliana AT3g45260/F18N11_20 mRNA, complete cds. |
GenBank | AJ621493 | 0.0 | AJ621493.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 1 (idz1 gene). |
GenBank | AY143936 | 0.0 | AY143936.1 Arabidopsis thaliana At3g45260/F18N11_20 mRNA, complete cds. |