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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa04g023980.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
NAC |
Protein Properties |
Length: 268aa MW: 30653.1 Da PI: 7.0317 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa04g023980.1 | genome | CSGP | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 157.9 | 4e-49 | 60 | 186 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
+ pGf+F+Ptd el+++yLk+k++g + ++ e+i+evdiy++ePwdLp k++ ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s
Csa04g023980.1 60 MFPGFKFSPTDIELISYYLKRKMDGLERSV-EIIPEVDIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERNVKS 153
579************************999.89***************778888899************************************** PP
NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
++e++g+k+tLvf+ grapkg +t+W+mhey +
Csa04g023980.1 154 -GSEVIGTKRTLVFHIGRAPKGGRTEWIMHEYCM 186
.9******************************86 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 268 aa
Download sequence Send
to blast |
CIVFFTSLVP IPETFFFLFF FLFVTPQFLR SQREKSFDLF LPLSFSYMAA APVEPAVTTM 60 FPGFKFSPTD IELISYYLKR KMDGLERSVE IIPEVDIYNF EPWDLPDKSI VKSDSEWFFF 120 CARGKKYPHG SQNRRATKMG YWKATGKERN VKSGSEVIGT KRTLVFHIGR APKGGRTEWI 180 MHEYCMIGVS LDGLVICRLR KNTEFQGATI QKSPQPSILP DKHHVDTNNA ISESISGWEN 240 MVDFYLSSES GQELLSEIAE SSQSSQNP
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-43 | 46 | 202 | 2 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-43 | 46 | 202 | 2 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-43 | 46 | 202 | 2 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-43 | 46 | 202 | 2 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-43 | 46 | 202 | 2 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-43 | 46 | 202 | 2 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:24625790}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:24625790}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK352951 | 0.0 | AK352951.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C18. |