PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g015890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 440aa    MW: 49892.6 Da    PI: 7.4804
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g015890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.63e-18193239148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+ Ed+llv++v+ +G++ W+ Ia++++ gR +kqc++rw+++l
   Csa04g015890.1 193 KGQWTPVEDKLLVKLVESHGTKKWSQIAKMLQ-GRVGKQCRERWHNHL 239
                      799*****************************.*************97 PP
2Myb_DNA-binding57.14.2e-18246287245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + WT+eEd +l++a+kq G++ W+ Iar+++ gRt++ +k++w+
   Csa04g015890.1 246 DGWTEEEDIILIEAHKQIGNR-WAEIARKLP-GRTENTIKNHWN 287
                      56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.534188243IPR017930Myb domain
SuperFamilySSF466891.62E-31190286IPR009057Homeodomain-like
SMARTSM007172.3E-16192241IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-28194247IPR009057Homeodomain-like
PfamPF139211.4E-18196254No hitNo description
CDDcd001671.39E-14196239No hitNo description
SMARTSM007172.2E-16244292IPR001005SANT/Myb domain
PROSITE profilePS5129419.671244294IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-21248292IPR009057Homeodomain-like
CDDcd001671.46E-12248290No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MEFESVIKMH YPYLAAVIYD DSLTIKDDFS CIHNMHHKPI QINLDMSHLP SMPHTHEIPS  60
KETNRGITPS PCTETFETYF HGTSNDQGFF SMAYTTSQTV ESNVSHVTHE STMWENDQNQ  120
GFIFGTESTF NLALVESNQF IMPKPNLSAN EDTIISRLQN NQVMIKTEQV KKNNKRFQIR  180
RIRKPTKNAS IIKGQWTPVE DKLLVKLVES HGTKKWSQIA KMLQGRVGKQ CRERWHNHLR  240
PDIKKDGWTE EEDIILIEAH KQIGNRWAEI ARKLPGRTEN TIKNHWNATK RRQNSRRAKG  300
KDEVSLQLGS NTLQNYIRSV TYKDDTLTLM TPNSNVGPKN MRDKGKGVMV AVKEDEEDEC  360
KYIVDGVMNM GLDNKTKMPS LAAVSSTCAS TSGSASASGS GVTMELDEPM TDSWMVMHGC  420
DEVMMSEIAL LEMIAHGRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-451912932104C-Myb DNA-Binding Domain
1msf_C7e-451912932104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169175VKKNNKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes the motif 5'-TAACGG-3' in the promoter of endosperm-induced genes (PubMed:27681170, PubMed:25194028, PubMed:19066902). Promotes vegetative-to-embryonic transition and the formation of somatic embryos from root explants in a WUS-independent manner but via the expression of embryonic genes (e.g. LEC1, LEC2, FUS3 and WUS) (PubMed:18695688). May play an important role during embryogenesis and seed maturation (PubMed:19066902, PubMed:25194028). Together with MYB115, activates the transcription of S-ACP-DES2/AAD2 and S-ACP-DES3/AAD3 thus promoting the biosynthesis of omega-7 monounsaturated fatty acid in seed endosperm (PubMed:27681170). Regulates negatively maturation genes in the endosperm (PubMed:25194028). {ECO:0000269|PubMed:18695688, ECO:0000269|PubMed:19066902, ECO:0000269|PubMed:25194028, ECO:0000269|PubMed:27681170}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g015890.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by LEC2. {ECO:0000269|PubMed:25194028}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502784.10.0PREDICTED: transcription factor MYB46-like
SwissprotQ9LVW40.0MY118_ARATH; Transcription factor MYB118
TrEMBLR0FRU30.0R0FRU3_9BRAS; Uncharacterized protein
STRINGXP_010502784.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60522643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.10.0myb domain protein 118
Publications ? help Back to Top
  1. Troncoso-Ponce MA, et al.
    Transcriptional Activation of Two Delta-9 Palmitoyl-ACP Desaturase Genes by MYB115 and MYB118 Is Critical for Biosynthesis of Omega-7 Monounsaturated Fatty Acids in the Endosperm of Arabidopsis Seeds.
    Plant Cell, 2016. 28(10): p. 2666-2682
    [PMID:27681170]
  2. Ettaki H, et al.
    Overexpression of MYB115, AAD2, or AAD3 in Arabidopsis thaliana seeds yields contrasting omega-7 contents.
    PLoS ONE, 2018. 13(1): p. e0192156
    [PMID:29381741]