PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04g015740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 129aa MW: 14209.1 Da PI: 8.109 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.3 | 1.5e-44 | 8 | 106 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC++dCv+apyfp e+p kfanvh++FGasnv+k+l+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ el+ Csa04g015740.1 8 PCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILQEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELE 102 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ Csa04g015740.1 103 ETNA 106 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.446 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-44 | 8 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MSNYTNSPCA ACKFLRRKCT SDCVFAPYFP PEEPTKFANV HRIFGASNVS KILQEVAPHQ 60 REDAVNSLAY EAEARLKDPV YGCVGAISVL QRQVLRLQRE LEETNADLMR YASCLGGETT 120 SAYGGRRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-60 | 6 | 121 | 9 | 125 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-60 | 6 | 121 | 9 | 125 | LOB family transfactor Ramosa2.1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04g015740.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB018114 | 1e-171 | AB018114.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGF10. | |||
GenBank | AB164304 | 1e-171 | AB164304.1 Arabidopsis thaliana ASL3 mRNA for ASYMMETRIC LEAVES2-like gene 3 protein, partial cds. | |||
GenBank | AB473836 | 1e-171 | AB473836.1 Arabidopsis thaliana ASL3 mRNA for ASYMMETRIC LEAVES2-like 3 protein, complete cds. | |||
GenBank | AC237336 | 1e-171 | AC237336.1 Arabidopsis lyrata clone JGIFAFI-69G3, complete sequence. | |||
GenBank | AF447892 | 1e-171 | AF447892.1 Arabidopsis thaliana LOB DOMAIN 25 (LBD25) mRNA, complete cds. | |||
GenBank | CP002686 | 1e-171 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006292048.2 | 5e-92 | LOW QUALITY PROTEIN: LOB domain-containing protein 25, partial | ||||
Refseq | XP_010425543.1 | 5e-92 | PREDICTED: LOB domain-containing protein 25 | ||||
Refseq | XP_010502770.1 | 5e-92 | PREDICTED: LOB domain-containing protein 25 | ||||
Swissprot | Q8L8Q3 | 1e-91 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | R0FRU7 | 1e-90 | R0FRU7_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.5575s0004.1.p | 2e-91 | (Capsella grandiflora) | ||||
STRING | XP_006292048.1 | 2e-91 | (Capsella rubella) | ||||
STRING | XP_010425543.1 | 2e-91 | (Camelina sativa) | ||||
STRING | XP_010502770.1 | 2e-91 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 2e-80 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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