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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa04838s010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GRAS | ||||||||
Protein Properties | Length: 192aa MW: 20926.4 Da PI: 4.5366 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 83.4 | 3.9e-26 | 98 | 192 | 1 | 104 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cAeav++++l+la+al++r+ la++++ +m ++a+yf+eALa+r++r ++ps+++ ++s eel + f++ sP+lkf+h Csa04838s010.1 98 LVQALVACAEAVQQENLSLADALVKRVGSLAASQAGAMGKVATYFAEALARRIYR--------IHPSSAAVDTSFEELL-QMNFYDSSPYLKFAH 183 689****************************************************........6666666555555544.446************ PP GRAS 96 ltaNqaIle 104 +taNqaIle Csa04838s010.1 184 FTANQAILE 192 *******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12041 | 7.5E-10 | 10 | 40 | IPR021914 | Transcriptional factor DELLA, N-terminal |
PROSITE profile | PS50985 | 18.989 | 72 | 192 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-23 | 98 | 192 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MVLSNDVVGS SNSFLNDTVH YNPSDLSGWA QTMLSGLSYY PDLDPTRVCD LRPITNDDES 60 CCSSNSSNKR IRLGPWCDSV SSESTRSVVL IEETGIRLVQ ALVACAEAVQ QENLSLADAL 120 VKRVGSLAAS QAGAMGKVAT YFAEALARRI YRIHPSSAAV DTSFEELLQM NFYDSSPYLK 180 FAHFTANQAI LE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610625, ECO:0000269|PubMed:14615596}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa04838s010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK117226 | 1e-172 | AK117226.1 Arabidopsis thaliana At5g17490 mRNA for RGA-like protein, complete cds, clone: RAFL16-78-A02. | |||
GenBank | AL391150 | 1e-172 | AL391150.1 Arabidopsis thaliana DNA chromosome 5, BAC clone K3M16 (ESSA project). | |||
GenBank | BT005905 | 1e-172 | BT005905.1 Arabidopsis thaliana At5g17490 gene, complete cds. | |||
GenBank | CP002688 | 1e-172 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010420475.1 | 1e-136 | PREDICTED: DELLA protein RGL3 | ||||
Swissprot | Q9LF53 | 1e-119 | RGL3_ARATH; DELLA protein RGL3 | ||||
TrEMBL | R0H0W3 | 1e-118 | R0H0W3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010420475.1 | 1e-135 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM837 | 28 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17490.1 | 1e-117 | RGA-like protein 3 |