![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Csa03g061330.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family |
Trihelix |
Protein Properties |
Length: 389aa MW: 42391.9 Da PI: 5.615 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Csa03g061330.1 | genome | CSGP | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Cas&pid=Csa03g061330.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 52.9 | 9.6e-17 | 91 | 177 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ +++Li+a ++ ++ ++g lk+++W+ev++ + r+ ++ ++ +qCk++++ ++k+yk++k+ ++ + s++++f++le
Csa03g061330.1 91 CWSEEATKVLIDAWGDRFSEPGKGTLKQQHWKEVAEIVnksRQCKYPKTDIQCKNRIDTVKKKYKQEKAKIASG--DGPSKWVFFKKLE 177
7*************************************99999999**************************98..56668******98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009733 | Biological Process | response to auxin |
GO:0009793 | Biological Process | embryo development ending in seed dormancy |
GO:0010029 | Biological Process | regulation of seed germination |
GO:0010431 | Biological Process | seed maturation |
GO:0048831 | Biological Process | regulation of shoot system development |
GO:0005730 | Cellular Component | nucleolus |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MEEDDEIQSI HSPGDSSLSP QAPPSPPILP TNDVTVAVVK KPTAASVSSQ SPSRNALALV 60 VHTPAVTGGG GSGNRNGRGG SGGGGGGRDD CWSEEATKVL IDAWGDRFSE PGKGTLKQQH 120 WKEVAEIVNK SRQCKYPKTD IQCKNRIDTV KKKYKQEKAK IASGDGPSKW VFFKKLESLI 180 GASTTTAITT RASEKAPMGG GLVSSRSHLF KRQAKGTQIQ GGGDLKRGSD SMRWHFRKRS 240 ASETESESES DPELEASPDS AESLPPPQPV SYQLPKRLKV DKSEGSGVGD VARAILGFTE 300 AYEKAETAKL KLMVELEKER MKFAKEMELQ RMQFLKTQLE ITQSNQEEEE RSRQRGDRRI 360 VDDDDDDDDD DDNDDDDRNV KNNGNVSS*
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Nucleic Localization
Signal ? help
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![NLS](draw_nls.php?sp=Cas&pid=Csa03g061330.1) |
No. |
Start |
End |
Sequence |
1 | 77 | 87 | RGGSGGGGGGR |
2 | 225 | 238 | KRGSDSMRWHFRKR |
Functional Description ? help
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Source |
Description |
UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF360325 | 0.0 | AF360325.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds. |
GenBank | AY056333 | 0.0 | AY056333.1 Arabidopsis thaliana unknown protein (At1g54060) mRNA, complete cds. |
GenBank | AY084772 | 0.0 | AY084772.1 Arabidopsis thaliana clone 117519 mRNA, complete sequence. |
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
GenBank | F15I1 | 0.0 | AC006577.2 Sequence of BAC F15I1 from Arabidopsis thaliana chromosome 1, complete sequence. |